RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 Q9HAA7 133 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 F5H768 121 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 BAALC-AS2P0C853 105 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 DAZ2Q13117 558 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 DAZ4Q86SG3 579 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 FAM218AQ96MZ4 157 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 TMEM243Q9BU79 118 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 DAZ3Q9NR90 486 aaKnown RBP6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 TRBV10-1A0A0K0K1A3 114 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 CR1P17927 2039 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 USP24Q9UPU5 2620 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 SHISA2Q6UWI4 295 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 C3orf56Q8N813 242 aa6.57□□□□□ -1.36
LIMCH1-215ENST00000512632 DEFB113Q30KQ7 82 aa6.56□□□□□ -1.36
LIMCH1-215ENST00000512632 MIR7-3HGQ8N6C7 128 aa6.56□□□□□ -1.36
LIMCH1-215ENST00000512632 CHCHD5Q9BSY4 110 aa6.56□□□□□ -1.36
LIMCH1-215ENST00000512632 Q6Q795 121 aa6.56□□□□□ -1.36
LIMCH1-215ENST00000512632 CSDC2Q9Y534 153 aaKnown RBP6.56□□□□□ -1.36
LIMCH1-215ENST00000512632 HIVEP2P31629 2446 aa6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 TRGV4A0A0C4DH28 118 aa6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 LINC00158P58513 81 aa6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 BBC3Q96PG8 261 aaPredicted RBP6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 C5orf38Q86SI9 138 aa6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 NBEAL2Q6ZNJ1 2754 aa6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 DEFB121Q5J5C9 76 aa6.55□□□□□ -1.36
LIMCH1-215ENST00000512632 APCP25054 2843 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 IGLV4-60A0A075B6I1 120 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 PFN2P35080 140 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 IL17DQ8TAD2 202 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 GIG44P09565 113 aaPredicted RBP6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 C11orf68Q9H3H3 251 aaKnown RBP6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 HERV-K104P63124 156 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 LINC00337Q8N6G1 96 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 COPS9Q8WXC6 57 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 FAM240AA0A1B0GVK7 77 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 DNAJC9-AS1A6NH13 148 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 SND1-IT1Q9HBX3 110 aa6.54□□□□□ -1.36
LIMCH1-215ENST00000512632 COX7B2Q8TF08 81 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 TRAV25A0A0B4J276 109 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 CRPP02741 224 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 ESM1Q9NQ30 184 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 ZNF469Q96JG9 3925 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 HIST2H2BCQ6DN03 193 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 SMCR5Q8TEV8 140 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 ATP5G1P05496 136 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 WFDC11Q8NEX6 87 aa6.53□□□□□ -1.36
LIMCH1-215ENST00000512632 FAM236AA0A1B0GUQ0 79 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 FAM236BA0A1B0GV22 79 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 MRPL23Q16540 153 aaKnown RBP6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 FAM19A3Q7Z5A8 133 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 PLAC8L1A1L4L8 177 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 TRACP01848 142 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 DEFB130BP0DP73 79 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 DEFB130AP0DP74 79 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 GAGE2AQ6NT46 116 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 C22orf24Q9Y442 160 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 IGKV2-28A0A075B6P5 120 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 IGKV2D-28P01615 120 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 OR13C6PQ8NH95 151 aa6.52□□□□□ -1.37
LIMCH1-215ENST00000512632 NOTCH2Q04721 2471 aa6.51□□□□□ -1.37
LIMCH1-215ENST00000512632 GCN1Q92616 2671 aaKnown RBP6.51□□□□□ -1.37
LIMCH1-215ENST00000512632 TRAV13-2A0A0B4J235 113 aa6.51□□□□□ -1.37
LIMCH1-215ENST00000512632 CCL18P55774 89 aa6.51□□□□□ -1.37
LIMCH1-215ENST00000512632 SMIM11BQ8TCY0 68 aa6.51□□□□□ -1.37
LIMCH1-215ENST00000512632 PAX4O43316 350 aa6.5□□□□□ -1.37
LIMCH1-215ENST00000512632 A0A087WYN8 130 aa6.5□□□□□ -1.37
LIMCH1-215ENST00000512632 DNAL4O96015 105 aa6.5□□□□□ -1.37
LIMCH1-215ENST00000512632 CLPSL2Q6UWE3 100 aa6.5□□□□□ -1.37
LIMCH1-215ENST00000512632 C9orf129Q5T035 196 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-215ENST00000512632 C16orf74Q96GX8 76 aa6.5□□□□□ -1.37
LIMCH1-215ENST00000512632 A0A096LPF7 62 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 TRBV6-8A0A0A6YYG3 113 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 IGHV3OR16-9A0A0B4J2B5 98 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 TRBV7-7A0A0K0K1E9 115 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 ACYP1P07311 99 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 MALP21145 153 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 TRBV6-4A0A1B0GX49 114 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 RPL28P46779 137 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 KRTAP1-3Q8IUG1 177 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 SLPIP03973 132 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 XCL1P47992 114 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 FHL2Q14192 279 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 C6orf226Q5I0X4 101 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 LINC01006Q8NI28 216 aa6.49□□□□□ -1.37
LIMCH1-215ENST00000512632 LINC00643Q86TS7 51 aa6.48□□□□□ -1.37
LIMCH1-215ENST00000512632 SMIM20Q8N5G0 67 aa6.48□□□□□ -1.37
LIMCH1-215ENST00000512632 LECT2O14960 151 aa6.48□□□□□ -1.37
LIMCH1-215ENST00000512632 C14orf132Q9NPU4 83 aa6.48□□□□□ -1.37
LIMCH1-215ENST00000512632 UBR5O95071 2799 aaPredicted RBP6.48□□□□□ -1.37
LIMCH1-215ENST00000512632 AKAP9Q99996 3911 aa6.47□□□□□ -1.37
LIMCH1-215ENST00000512632 C19orf73Q9NVV2 129 aa6.47□□□□□ -1.37
LIMCH1-215ENST00000512632 PF4P02776 101 aa6.47□□□□□ -1.37
LIMCH1-215ENST00000512632 TMEM86BQ8N661 226 aa6.47□□□□□ -1.37
LIMCH1-215ENST00000512632 INAFM2P0DMQ5 153 aa6.46□□□□□ -1.37
LIMCH1-215ENST00000512632 ZNF843Q8N446 348 aa6.46□□□□□ -1.37
LIMCH1-215ENST00000512632 CSNK1G2-AS1Q8NCQ2 148 aa6.46□□□□□ -1.37
LIMCH1-215ENST00000512632 PRR3P79522 188 aaKnown RBP6.46□□□□□ -1.38
LIMCH1-215ENST00000512632 A0A087WZ39 114 aa6.46□□□□□ -1.38
LIMCH1-215ENST00000512632 LINC00959A0A1B0GUT2 108 aa6.46□□□□□ -1.38
LIMCH1-215ENST00000512632 IGLV1-51P01701 117 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms