RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 UTP20O75691 2785 aaKnown RBP1.86□□□□□ -2.11
VPS13A-212ENST00000493341 PRRC2CQ9Y520 2896 aaKnown RBP1.86□□□□□ -2.11
VPS13A-212ENST00000493341 SORL1Q92673 2214 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 NBPF19A0A087WUL8 3843 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 MYO7BQ6PIF6 2116 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 CNTRLQ7Z7A1 2325 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 IGF2P01344 180 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 IGLV3-1P01715 115 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 STATHP02808 62 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 SCIMPQ6UWF3 145 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 LYPD5Q6UWN5 251 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 UNC79Q9P2D8 2635 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 PDZD2O15018 2839 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 AKAP9Q99996 3911 aa1.86□□□□□ -2.11
VPS13A-212ENST00000493341 DNAJC13O75165 2243 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 FLNBO75369 2602 aaKnown RBP1.85□□□□□ -2.11
VPS13A-212ENST00000493341 NBASA2RRP1 2371 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 TMEM30CPA0ZSE6 113 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 ATP6V1G2-DDX39BF2Z307 99 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 TFF3Q07654 80 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 C2orf88Q9BSF0 95 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 PROK2Q9HC23 129 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 HECTD1Q9ULT8 2610 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 APCP25054 2843 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 SPTBN1Q01082 2364 aaKnown RBP1.85□□□□□ -2.11
VPS13A-212ENST00000493341 ITPR2Q14571 2701 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 CELSR2Q9HCU4 2923 aa1.85□□□□□ -2.11
VPS13A-212ENST00000493341 SPTAN1Q13813 2472 aaKnown RBP1.85□□□□□ -2.11
VPS13A-212ENST00000493341 SPATA45Q537H7 98 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 OCIAD2Q56VL3 154 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 SLC48A1Q6P1K1 146 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 COMMD6Q7Z4G1 85 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 FBN1P35555 2871 aaKnown RBP1.84□□□□□ -2.11
VPS13A-212ENST00000493341 NOTCH2Q04721 2471 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 MAST4O15021 2626 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 CRYBG3Q68DQ2 2970 aa1.84□□□□□ -2.11
VPS13A-212ENST00000493341 TFF1P04155 84 aa1.84□□□□□ -2.12
VPS13A-212ENST00000493341 DPH3Q96FX2 82 aa1.84□□□□□ -2.12
VPS13A-212ENST00000493341 BOKQ9UMX3 212 aaPredicted RBP1.84□□□□□ -2.12
VPS13A-212ENST00000493341 TEX15Q9BXT5 2789 aa1.84□□□□□ -2.12
VPS13A-212ENST00000493341 PCNX1Q96RV3 2341 aa1.84□□□□□ -2.12
VPS13A-212ENST00000493341 FBN2P35556 2912 aa1.84□□□□□ -2.12
VPS13A-212ENST00000493341 COL12A1Q99715 3063 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 NAV2Q8IVL1 2488 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 COX6B1P14854 86 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 PDE6GP18545 87 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 MEIG1Q5JSS6 88 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 C10orf105Q8TEF2 133 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 LRBAP50851 2863 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 RELNP78509 3460 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 DCHS2Q6V1P9 2916 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 CENPEQ02224 2701 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 RP1L1Q8IWN7 2480 aaPredicted RBP1.83□□□□□ -2.12
VPS13A-212ENST00000493341 LINC01545Q5VT33 79 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 RPS27LQ71UM5 84 aaKnown RBP1.83□□□□□ -2.12
VPS13A-212ENST00000493341 VSTM2AQ8TAG5 236 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 LINC00526Q96FQ7 95 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 OTOGQ6ZRI0 2925 aa1.83□□□□□ -2.12
VPS13A-212ENST00000493341 ABCA12Q86UK0 2595 aa1.82□□□□□ -2.12
VPS13A-212ENST00000493341 ANKRD17O75179 2603 aaKnown RBP1.82□□□□□ -2.12
VPS13A-212ENST00000493341 PKDREJQ9NTG1 2253 aa1.82□□□□□ -2.12
VPS13A-212ENST00000493341 HRNRQ86YZ3 2850 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-212ENST00000493341 APOC1P02654 83 aa1.82□□□□□ -2.12
VPS13A-212ENST00000493341 HIST1H1DP16402 221 aaKnown RBP1.82□□□□□ -2.12
VPS13A-212ENST00000493341 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.82□□□□□ -2.12
VPS13A-212ENST00000493341 PPP3R2Q96LZ3 170 aa1.82□□□□□ -2.12
VPS13A-212ENST00000493341 MRPL36Q9P0J6 103 aaKnown RBP1.82□□□□□ -2.12
VPS13A-212ENST00000493341 MED13LQ71F56 2210 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 TRAV12-2A0A075B6T6 113 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 LOC100130705A0A1B0GUX0 176 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 NUPR2A6NF83 97 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 GYPBP06028 91 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 KRTAP21-3Q3LHN1 58 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 PPDPFLQ8WWR9 84 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 IL5P05113 134 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 C4orf33Q8N1A6 199 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 SEC11CQ9BY50 192 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 TMEM242Q9NWH2 141 aa1.81□□□□□ -2.12
VPS13A-212ENST00000493341 TACC2O95359 2948 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 ANKHD1Q8IWZ3 2542 aaKnown RBP1.8□□□□□ -2.12
VPS13A-212ENST00000493341 MED12Q93074 2177 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 TRAV2A0A0B4J234 112 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 IGHV3-30P01768 117 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 LINC00032P0C843 101 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 IGHV3-30-5P0DP03 117 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 RPL38P63173 70 aaKnown RBP1.8□□□□□ -2.12
VPS13A-212ENST00000493341 C12orf57Q99622 126 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 ATG5Q9H1Y0 275 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 ADGRG4Q8IZF6 3080 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 HIVEP1P15822 2718 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 MYO9AB2RTY4 2548 aa1.8□□□□□ -2.12
VPS13A-212ENST00000493341 DEFB108AA8MXU0 73 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 HMGN2P05204 90 aaKnown RBP1.79□□□□□ -2.12
VPS13A-212ENST00000493341 SLC25A6P12236 298 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 RPL37AP61513 92 aaKnown RBP1.79□□□□□ -2.12
VPS13A-212ENST00000493341 OR2T2Q6IF00 324 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 KRTAP5-5Q701N2 237 aaPredicted RBP1.79□□□□□ -2.12
VPS13A-212ENST00000493341 TMEM203Q969S6 136 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 DMAC1Q96GE9 116 aa1.79□□□□□ -2.12
VPS13A-212ENST00000493341 GNG8Q9UK08 70 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms