RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 SMKR1H3BMG3 65 aa9.23□□□□□ -0.93
HDAC3-213ENST00000492506 CXCL5P42830 114 aa9.23□□□□□ -0.93
HDAC3-213ENST00000492506 NEXN-AS1Q8NBZ9 246 aa9.23□□□□□ -0.93
HDAC3-213ENST00000492506 NTN5Q8WTR8 489 aaPredicted RBP9.23□□□□□ -0.93
HDAC3-213ENST00000492506 SLC50A1Q9BRV3 221 aa9.23□□□□□ -0.93
HDAC3-213ENST00000492506 TRBV30A0A0K0K1B3 111 aa9.22□□□□□ -0.93
HDAC3-213ENST00000492506 CFC1BP0CG36 223 aa9.22□□□□□ -0.93
HDAC3-213ENST00000492506 CFC1P0CG37 223 aa9.22□□□□□ -0.93
HDAC3-213ENST00000492506 SLC25A29Q8N8R3 303 aa9.22□□□□□ -0.93
HDAC3-213ENST00000492506 SCGB3A1Q96QR1 104 aa9.22□□□□□ -0.93
HDAC3-213ENST00000492506 SMIM2Q9BVW6 85 aa9.22□□□□□ -0.93
HDAC3-213ENST00000492506 A0A0J9YY99 117 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 RBAKDNA6NC62 111 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 M0R381 172 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 IGHV3-30P01768 117 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 COX6CP09669 75 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 IGHV3-30-5P0DP03 117 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 HTN3P15516 51 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 FXYD7P58549 80 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 DEFB1P60022 68 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 BAALCQ8WXS3 180 aa9.21□□□□□ -0.94
HDAC3-213ENST00000492506 VPS13BQ7Z7G8 4022 aa9.2□□□□□ -0.94
HDAC3-213ENST00000492506 NBDYA0A0U1RRE5 68 aa9.2□□□□□ -0.94
HDAC3-213ENST00000492506 IGHV3-33P01772 117 aa9.2□□□□□ -0.94
HDAC3-213ENST00000492506 RPL7P18124 248 aaKnown RBP9.2□□□□□ -0.94
HDAC3-213ENST00000492506 SNRPD3P62318 126 aaKnown RBP9.2□□□□□ -0.94
HDAC3-213ENST00000492506 C6orf223Q8N319 242 aa9.2□□□□□ -0.94
HDAC3-213ENST00000492506 IGHV3OR16-12A0A075B7B8 117 aa9.19□□□□□ -0.94
HDAC3-213ENST00000492506 MRPS12O15235 138 aaKnown RBP9.19□□□□□ -0.94
HDAC3-213ENST00000492506 ERCC8Q13216 396 aa9.19□□□□□ -0.94
HDAC3-213ENST00000492506 PMVKQ15126 192 aa9.19□□□□□ -0.94
HDAC3-213ENST00000492506 NRACQ8N912 160 aa9.19□□□□□ -0.94
HDAC3-213ENST00000492506 C8orf49Q96NF6 230 aa9.19□□□□□ -0.94
HDAC3-213ENST00000492506 MYCBP2O75592 4640 aa9.19□□□□□ -0.94
HDAC3-213ENST00000492506 FAT1Q14517 4588 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 TMSB15BA0A087X1C1 80 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 A0A0J9YX75 114 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 C11orf86A6NJI1 115 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 BUB3O43684 328 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 IGKV3-20P01619 116 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 CRYGAP11844 174 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 TMEM258P61165 79 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 LINC00643Q86TS7 51 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 C1orf158Q8N1D5 194 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 TMEM141Q96I45 108 aa9.18□□□□□ -0.94
HDAC3-213ENST00000492506 C2orf82Q6UX34 121 aa9.17□□□□□ -0.94
HDAC3-213ENST00000492506 H3BTX0 84 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 ATOX1O00244 68 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 ORM1P02763 201 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 LINC00694P0DN24 101 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 COX7CP15954 63 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 HERVK_113P63121 156 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 ANXA2RQ3ZCQ2 193 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 TMEM263Q8WUH6 116 aaKnown RBP9.16□□□□□ -0.94
HDAC3-213ENST00000492506 RNF125Q96EQ8 232 aa9.16□□□□□ -0.94
HDAC3-213ENST00000492506 SDHAF1A6NFY7 115 aa9.15□□□□□ -0.94
HDAC3-213ENST00000492506 LGALS3P17931 250 aaKnown RBP9.15□□□□□ -0.94
HDAC3-213ENST00000492506 KRTAP10-2P60368 255 aa9.15□□□□□ -0.94
HDAC3-213ENST00000492506 DAD1P61803 113 aa9.15□□□□□ -0.94
HDAC3-213ENST00000492506 GAGE2AQ6NT46 116 aa9.15□□□□□ -0.94
HDAC3-213ENST00000492506 Q6ZQT7 251 aa9.15□□□□□ -0.94
HDAC3-213ENST00000492506 FAM19A5Q7Z5A7 132 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-213ENST00000492506 MRPL53Q96EL3 112 aaKnown RBP9.15□□□□□ -0.94
HDAC3-213ENST00000492506 SOCS3O14543 225 aa9.14□□□□□ -0.95
HDAC3-213ENST00000492506 ZNF56Q15929 161 aa9.14□□□□□ -0.95
HDAC3-213ENST00000492506 PLEKHB2Q96CS7 222 aa9.14□□□□□ -0.95
HDAC3-213ENST00000492506 FAM236AA0A1B0GUQ0 79 aa9.13□□□□□ -0.95
HDAC3-213ENST00000492506 FAM236BA0A1B0GV22 79 aa9.13□□□□□ -0.95
HDAC3-213ENST00000492506 SUMO2P61956 95 aaKnown RBP9.13□□□□□ -0.95
HDAC3-213ENST00000492506 TIMM17AQ99595 171 aa9.13□□□□□ -0.95
HDAC3-213ENST00000492506 KRTAP1-5Q9BYS1 174 aa9.13□□□□□ -0.95
HDAC3-213ENST00000492506 LINC00588Q9Y4M8 146 aa9.13□□□□□ -0.95
HDAC3-213ENST00000492506 A8MTW9 85 aa9.12□□□□□ -0.95
HDAC3-213ENST00000492506 F6UB75 175 aa9.12□□□□□ -0.95
HDAC3-213ENST00000492506 PRM2P04554 102 aa9.12□□□□□ -0.95
HDAC3-213ENST00000492506 Q1RN00 199 aa9.12□□□□□ -0.95
HDAC3-213ENST00000492506 C2orf66Q6UXQ4 117 aa9.12□□□□□ -0.95
HDAC3-213ENST00000492506 CHCHD5Q9BSY4 110 aa9.12□□□□□ -0.95
HDAC3-213ENST00000492506 EPM2AB3EWF7 344 aa9.11□□□□□ -0.95
HDAC3-213ENST00000492506 LEPROTO15243 131 aa9.11□□□□□ -0.95
HDAC3-213ENST00000492506 TRACP01848 142 aa9.11□□□□□ -0.95
HDAC3-213ENST00000492506 LENEPQ9Y5L5 61 aa9.11□□□□□ -0.95
HDAC3-213ENST00000492506 SRRM2Q9UQ35 2752 aaKnown RBP9.11□□□□□ -0.95
HDAC3-213ENST00000492506 NDUFC2-KCTD14E9PQ53 114 aa9.1□□□□□ -0.95
HDAC3-213ENST00000492506 M0R3E3 92 aa9.1□□□□□ -0.95
HDAC3-213ENST00000492506 CCL18P55774 89 aa9.1□□□□□ -0.95
HDAC3-213ENST00000492506 DPH3P1Q9H4G8 78 aa9.1□□□□□ -0.95
HDAC3-213ENST00000492506 TEX49A0A1B0GTD5 131 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 PLAC8L1A1L4L8 177 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 A4D1N5 150 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 LYRM9A8MSI8 78 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 J3QQQ9 107 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 INAFM2P0DMQ5 153 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 SPANXN1Q5VSR9 72 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 C20orf173Q96LM9 149 aa9.09□□□□□ -0.95
HDAC3-213ENST00000492506 FLG2Q5D862 2391 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-213ENST00000492506 TRGV11A0A075B6L2 103 aa9.08□□□□□ -0.96
HDAC3-213ENST00000492506 IGKV2-40A0A087WW87 121 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-213ENST00000492506 F5H768 121 aa9.08□□□□□ -0.96
HDAC3-213ENST00000492506 LST1O00453 97 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms