RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 VCX2Q9H322 139 aa4.34□□□□□ -1.71
PTPRE-209ENST00000487428 PKIGQ9Y2B9 76 aa4.34□□□□□ -1.71
PTPRE-209ENST00000487428 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.33□□□□□ -1.72
PTPRE-209ENST00000487428 TRAV13-1A0A0B4J241 112 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 TRAV12-1A0A0B4J245 112 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 TINCRA0A1B0GVN0 87 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 IFITM10A6NMD0 228 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 C16orf90A8MZG2 172 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 COX7A2LO14548 114 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 GCSHP23434 173 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 HERVK_113P63121 156 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 ODF1Q14990 250 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 PMVKQ15126 192 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 CST9LQ9H4G1 147 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 BIRC6Q9NR09 4857 aa4.33□□□□□ -1.72
PTPRE-209ENST00000487428 IGHV3-64A0A075B6Q5 118 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 IGLV5-52A0A0A0MRZ9 124 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BKO60814 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HSBP1O75506 76 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BJP06899 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BOP23527 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BBP33778 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 XCL1P47992 114 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BDP58876 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 LINC00310P59036 64 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BCP62807 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 CIRBPQ14011 172 aaKnown RBP4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST2H2BEQ16778 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 RNF151Q2KHN1 245 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.32□□□□□ -1.72
PTPRE-209ENST00000487428 BAGE3Q86Y29 109 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BHQ93079 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BNQ99877 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 HIST1H2BMQ99879 126 aa4.32□□□□□ -1.72
PTPRE-209ENST00000487428 OPRPNQ99935 248 aaPredicted RBP4.32□□□□□ -1.72
PTPRE-209ENST00000487428 LOC105371267A0A1B0GV96 52 aa4.31□□□□□ -1.72
PTPRE-209ENST00000487428 SCO1O75880 301 aa4.31□□□□□ -1.72
PTPRE-209ENST00000487428 SLPIP03973 132 aa4.31□□□□□ -1.72
PTPRE-209ENST00000487428 IGLC3P0DOY3 106 aa4.31□□□□□ -1.72
PTPRE-209ENST00000487428 RNASE13Q5GAN3 156 aaKnown RBP4.31□□□□□ -1.72
PTPRE-209ENST00000487428 IGKV3OR2-268A0A0C4DH90 116 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 hDV102S1A0JD36 115 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 EPM2AB3EWF7 344 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 ZNF561-AS1K7EIQ3 104 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 SERF1AO75920 110 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 TLX1NBP0CAT3 122 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 MALP21145 153 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 S100A12P80511 92 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 COX6A2Q02221 97 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 KIAA0087Q14695 138 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 SDIM1Q6ZPB5 146 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 Q8IZM0 81 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 IFI27L1Q96BM0 104 aa4.3□□□□□ -1.72
PTPRE-209ENST00000487428 MRPL35Q9NZE8 188 aaKnown RBP4.3□□□□□ -1.72
PTPRE-209ENST00000487428 TMA7Q9Y2S6 64 aaKnown RBP4.3□□□□□ -1.72
PTPRE-209ENST00000487428 DNAH8Q96JB1 4490 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 IGLV4-69A0A075B6H9 119 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 LECT2O14960 151 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 LEPROTL1O95214 131 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 S100A6P06703 90 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 CXCL5P42830 114 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 KRTAP10-1P60331 282 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 SFTA2Q6UW10 78 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 C5orf38Q86SI9 138 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 GEMIN7Q9H840 131 aaKnown RBP4.29□□□□□ -1.72
PTPRE-209ENST00000487428 HSPB8Q9UJY1 196 aa4.29□□□□□ -1.72
PTPRE-209ENST00000487428 APOBP04114 4563 aaKnown RBP4.28□□□□□ -1.72
PTPRE-209ENST00000487428 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.28□□□□□ -1.72
PTPRE-209ENST00000487428 IGLV5-39A0A0G2JS06 123 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 A0A0J9YXV3 536 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 TRBV30A0A0K0K1B3 111 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 SMIM1B2RUZ4 78 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 F8VRH5 84 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 H3BRM9 83 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 XGP55808 180 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 SYCNQ0VAF6 134 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 CARD19Q96LW7 228 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 LINC00474Q9P2X8 69 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 CDKN2A-AS1Q9UH64 79 aa4.28□□□□□ -1.72
PTPRE-209ENST00000487428 HSPG2P98160 4391 aa4.28□□□□□ -1.73
PTPRE-209ENST00000487428 C11orf86A6NJI1 115 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 NDUFA1O15239 70 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 NUPR1O60356 82 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 SPAG11BQ08648 103 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 PMCHL1Q16048 86 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 ZC2HC1BQ5TFG8 222 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 ORAOV1Q8WV07 137 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 CHAC1Q9BUX1 264 aa4.27□□□□□ -1.73
PTPRE-209ENST00000487428 ZNF22P17026 224 aaPredicted RBP4.26□□□□□ -1.73
PTPRE-209ENST00000487428 PLNP26678 52 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 AKR1D1P51857 326 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 HIGD2BQ4VC39 106 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 Q6ZRU5 148 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 FAM19A2Q8N3H0 131 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 LINC00469Q8N7U9 141 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 SPACA4Q8TDM5 124 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 CAMK2N2Q96S95 79 aa4.26□□□□□ -1.73
PTPRE-209ENST00000487428 KIAA1109Q2LD37 5005 aa4.25□□□□□ -1.73
PTPRE-209ENST00000487428 LOC107984640A0A0U1RRK4 108 aa4.25□□□□□ -1.73
PTPRE-209ENST00000487428 MAP1LC3CQ9BXW4 147 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms