RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 LELP1Q5T871 98 aa9.75□□□□□ -0.85
CUX1-209ENST00000487284 STARD9Q9P2P6 4700 aa9.74□□□□□ -0.85
CUX1-209ENST00000487284 IGHV1-58A0A0C4DH39 117 aa9.74□□□□□ -0.85
CUX1-209ENST00000487284 H3BRM9 83 aa9.74□□□□□ -0.85
CUX1-209ENST00000487284 BVES-AS1Q5T3Y7 98 aa9.74□□□□□ -0.85
CUX1-209ENST00000487284 IGLL5B9A064 214 aa9.73□□□□□ -0.85
CUX1-209ENST00000487284 TMEM262E9PQX1 116 aa9.73□□□□□ -0.85
CUX1-209ENST00000487284 IGHV3-30-3P0DP02 117 aa9.73□□□□□ -0.85
CUX1-209ENST00000487284 LGALS3P17931 250 aaKnown RBP9.73□□□□□ -0.85
CUX1-209ENST00000487284 TENM2Q9NT68 2774 aa9.72□□□□□ -0.85
CUX1-209ENST00000487284 IGHV3-64A0A075B6Q5 118 aa9.72□□□□□ -0.85
CUX1-209ENST00000487284 TRAV8-3A0A0A6YYJ7 113 aa9.72□□□□□ -0.85
CUX1-209ENST00000487284 SPINK8P0C7L1 97 aa9.72□□□□□ -0.85
CUX1-209ENST00000487284 LYPD5Q6UWN5 251 aa9.72□□□□□ -0.85
CUX1-209ENST00000487284 WWC2-AS2Q96NR7 200 aa9.72□□□□□ -0.85
CUX1-209ENST00000487284 IGLV5-39A0A0G2JS06 123 aa9.71□□□□□ -0.86
CUX1-209ENST00000487284 NUPR2A6NF83 97 aa9.71□□□□□ -0.86
CUX1-209ENST00000487284 TAL2Q16559 108 aa9.71□□□□□ -0.86
CUX1-209ENST00000487284 COL5A1-AS1Q5SY13 56 aa9.71□□□□□ -0.86
CUX1-209ENST00000487284 ZFAND6Q6FIF0 208 aa9.71□□□□□ -0.86
CUX1-209ENST00000487284 LINC00959A0A1B0GUT2 108 aa9.7□□□□□ -0.86
CUX1-209ENST00000487284 C15orf53Q8NAA6 179 aa9.7□□□□□ -0.86
CUX1-209ENST00000487284 MUC7Q8TAX7 377 aa9.7□□□□□ -0.86
CUX1-209ENST00000487284 SMIM1B2RUZ4 78 aa9.69□□□□□ -0.86
CUX1-209ENST00000487284 SCGB1D4Q6XE38 83 aa9.69□□□□□ -0.86
CUX1-209ENST00000487284 ORAOV1Q8WV07 137 aa9.69□□□□□ -0.86
CUX1-209ENST00000487284 IGHV3OR16-9A0A0B4J2B5 98 aa9.68□□□□□ -0.86
CUX1-209ENST00000487284 IGKV3OR2-268A0A0C4DH90 116 aa9.68□□□□□ -0.86
CUX1-209ENST00000487284 CCL25O15444 150 aa9.68□□□□□ -0.86
CUX1-209ENST00000487284 Q8N3U1 123 aa9.68□□□□□ -0.86
CUX1-209ENST00000487284 TM2D2Q9BX73 214 aa9.67□□□□□ -0.86
CUX1-209ENST00000487284 KLK5Q9Y337 293 aaPredicted RBP9.67□□□□□ -0.86
CUX1-209ENST00000487284 SS18Q15532 418 aa9.67□□□□□ -0.86
CUX1-209ENST00000487284 C10orf126Q8N4M7 172 aa9.67□□□□□ -0.86
CUX1-209ENST00000487284 SPANXB1Q9NS25 103 aaPredicted RBP9.67□□□□□ -0.86
CUX1-209ENST00000487284 NDUFA12Q9UI09 145 aa9.67□□□□□ -0.86
CUX1-209ENST00000487284 APLNQ9ULZ1 77 aa9.67□□□□□ -0.86
CUX1-209ENST00000487284 ANGP03950 147 aaKnown RBP9.66□□□□□ -0.86
CUX1-209ENST00000487284 CEND1Q8N111 149 aa9.66□□□□□ -0.86
CUX1-209ENST00000487284 LINC00269Q8N2A0 174 aa9.66□□□□□ -0.86
CUX1-209ENST00000487284 HIST1H4GQ99525 98 aa9.66□□□□□ -0.86
CUX1-209ENST00000487284 LYSTQ99698 3801 aa9.66□□□□□ -0.86
CUX1-209ENST00000487284 A0A1B0GV90 55 aa9.65□□□□□ -0.86
CUX1-209ENST00000487284 GCSHP23434 173 aa9.65□□□□□ -0.86
CUX1-209ENST00000487284 REG3AQ06141 175 aa9.65□□□□□ -0.86
CUX1-209ENST00000487284 ESRGQ1W209 222 aa9.65□□□□□ -0.86
CUX1-209ENST00000487284 CLPSL2Q6UWE3 100 aa9.65□□□□□ -0.86
CUX1-209ENST00000487284 A0A087WZ39 114 aa9.64□□□□□ -0.87
CUX1-209ENST00000487284 A0A0J9YXY3 114 aa9.64□□□□□ -0.87
CUX1-209ENST00000487284 NDUFA1O15239 70 aa9.64□□□□□ -0.87
CUX1-209ENST00000487284 FXYD2P54710 66 aa9.64□□□□□ -0.87
CUX1-209ENST00000487284 A6NDN8 102 aa9.63□□□□□ -0.87
CUX1-209ENST00000487284 WFDC10BQ8IUB3 73 aa9.63□□□□□ -0.87
CUX1-209ENST00000487284 PRR34Q9NV39 138 aa9.63□□□□□ -0.87
CUX1-209ENST00000487284 LINC01561Q8N1V8 128 aa9.63□□□□□ -0.87
CUX1-209ENST00000487284 XCL1P47992 114 aa9.62□□□□□ -0.87
CUX1-209ENST00000487284 TMEM238C9JI98 176 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 K7EP13 123 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 SRSF9Q13242 221 aaKnown RBP eCLIP9.61□□□□□ -0.87
CUX1-209ENST00000487284 CD164L2Q6UWJ8 174 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 C5orf38Q86SI9 138 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 CHCHD10Q8WYQ3 142 aaPredicted RBP9.61□□□□□ -0.87
CUX1-209ENST00000487284 ZNF625Q96I27 306 aaPredicted RBP9.61□□□□□ -0.87
CUX1-209ENST00000487284 LITAFQ99732 161 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 KLK12Q9UKR0 248 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 LINC00588Q9Y4M8 146 aa9.61□□□□□ -0.87
CUX1-209ENST00000487284 TAX1BP3O14907 124 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 TIMM17BO60830 172 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 CCL18P55774 89 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 CASC10Q5T4H9 136 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 COX7B2Q8TF08 81 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 Q9H8V8 135 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 VPS13DQ5THJ4 4388 aa9.6□□□□□ -0.87
CUX1-209ENST00000487284 DNAH1Q9P2D7 4330 aa9.59□□□□□ -0.87
CUX1-209ENST00000487284 C3orf84H3BNL1 204 aa9.59□□□□□ -0.87
CUX1-209ENST00000487284 IGHV3-30P01768 117 aa9.59□□□□□ -0.87
CUX1-209ENST00000487284 IGHV3-33P01772 117 aa9.59□□□□□ -0.87
CUX1-209ENST00000487284 IGHV3-30-5P0DP03 117 aa9.59□□□□□ -0.87
CUX1-209ENST00000487284 PTTG1IPP53801 180 aa9.59□□□□□ -0.87
CUX1-209ENST00000487284 ENHOQ6UWT2 76 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 IGLV10-54A0A075B6I4 117 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 HERV-K104P63124 156 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 LINC01556Q5JQF7 62 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 SPANXDQ9BXN6 97 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 SPANXCQ9NY87 97 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 COX11Q9Y6N1 276 aa9.58□□□□□ -0.88
CUX1-209ENST00000487284 A0A1B0GWB2 263 aa9.57□□□□□ -0.88
CUX1-209ENST00000487284 COX7A2LO14548 114 aa9.57□□□□□ -0.88
CUX1-209ENST00000487284 FOXI1Q12951 378 aa9.57□□□□□ -0.88
CUX1-209ENST00000487284 Q6ZVH6 145 aa9.57□□□□□ -0.88
CUX1-209ENST00000487284 NHP2Q9NX24 153 aaKnown RBP9.57□□□□□ -0.88
CUX1-209ENST00000487284 TRAV8-4A0A0B4J246 113 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 TMEM238LA0A1B0GVL6 79 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 A6NJY4 79 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 CRPP02741 224 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 SMIM13P0DJ93 91 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 UBE2DNLQ8IWF7 75 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 TOMM7Q9P0U1 55 aa9.56□□□□□ -0.88
CUX1-209ENST00000487284 DNAH10OSP0CZ25 163 aa9.55□□□□□ -0.88
CUX1-209ENST00000487284 MIAQ16674 131 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms