RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GNRH2O43555 120 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 MT-ND6P03923 174 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 ARMS2P0C7Q2 107 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 IGLC6P0CF74 106 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 SCGB1A1P11684 91 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 TCL1AP56279 114 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 FXYD7P58549 80 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 BATFQ16520 125 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 C5orf47Q569G3 176 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 OR10J3Q5JRS4 329 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 RASL11AQ6T310 242 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 ATP5L2Q7Z4Y8 100 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 BAGE3Q86Y29 109 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 ORMDL3Q8N138 153 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 DEFB125Q8N687 156 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 LINC00337Q8N6G1 96 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 LINC00467Q9BRT7 94 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 PKD1L1Q8TDX9 2849 aa2.43□□□□□ -2.02
PTCD3-216ENST00000487043 A0A1B0GUT8 65 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 A0A1B0GXF2 115 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 M0QXV9 152 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 CCL25O15444 150 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 SPINK4O60575 86 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 NTF3P20783 257 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 S100A4P26447 101 aaKnown RBP2.42□□□□□ -2.02
PTCD3-216ENST00000487043 ASIPP42127 132 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 CD164Q04900 197 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 KRTAP21-3Q3LHN1 58 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 SPATA45Q537H7 98 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 LYZL1Q6UWQ5 148 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 GTF2H5Q6ZYL4 71 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 NIT1Q86X76 327 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 BOD1L2Q8IYS8 172 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 C1orf158Q8N1D5 194 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 FER1L6-AS1Q8NA97 138 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 LINC01587Q99440 93 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 PMCHL2Q9BQD1 86 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 GNB1LQ9BYB4 327 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 CNFNQ9BYD5 112 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 WFDC10AQ9H1F0 79 aa2.42□□□□□ -2.02
PTCD3-216ENST00000487043 IGLV4-60A0A075B6I1 120 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 LOC389332A0A1B0GUA5 103 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 TMEM238C9JI98 176 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 IGLC3P0DOY3 106 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 RNASE3P12724 160 aaKnown RBP2.41□□□□□ -2.02
PTCD3-216ENST00000487043 HBBP68871 147 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 OCIAD2Q56VL3 154 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 SPANXN1Q5VSR9 72 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 MRPL54Q6P161 138 aaKnown RBP2.41□□□□□ -2.02
PTCD3-216ENST00000487043 TMEM136Q6ZRR5 245 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 GATD1Q8NB37 220 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 OR10AG1Q8NH19 301 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 PTH2Q96A98 100 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 AP1S3Q96PC3 154 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 TMEM191AQ9H0A3 160 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 CST9LQ9H4G1 147 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 PHLDA3Q9Y5J5 127 aa2.41□□□□□ -2.02
PTCD3-216ENST00000487043 IGKV2-28A0A075B6P5 120 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 MUC21A0A0G2JKD1 596 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 MUC21A0A140T8X8 626 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 A0A1B0GV72 72 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 SMIM9A6NGZ8 99 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 H3BVH4 76 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 IGKV2D-28P01615 120 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 PRM2P04554 102 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 SMIM17P0DL12 118 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 HTN1P15515 57 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 KRTAP12-2P59991 146 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 KRTDAPP60985 99 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 KPRPQ5T749 579 aaPredicted RBP2.4□□□□□ -2.03
PTCD3-216ENST00000487043 FAM104BQ5XKR9 115 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 ST20Q9HBF5 79 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 SND1-IT1Q9HBX3 110 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 MUC4Q99102 2169 aa2.4□□□□□ -2.03
PTCD3-216ENST00000487043 J3QR89 54 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 M0R2P5 195 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 M0R381 172 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 CRYGDP07320 174 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 EVI2AP22794 236 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 HINT1P49773 126 aaPredicted RBP2.39□□□□□ -2.03
PTCD3-216ENST00000487043 LINC00315P59091 139 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 KRTAP10-8P60410 259 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 SEC11AP67812 179 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 RRN3P1Q2M238 152 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 LGALS9BQ3B8N2 356 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 FAM222AQ5U5X8 452 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 AMN1Q8IY45 258 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 TMEM263Q8WUH6 116 aaKnown RBP2.39□□□□□ -2.03
PTCD3-216ENST00000487043 DPH3P1Q9H4G8 78 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 RBM12B-AS1Q9P1G2 102 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 TIMM8BQ9Y5J9 83 aaPredicted RBP2.39□□□□□ -2.03
PTCD3-216ENST00000487043 ZNF706Q9Y5V0 76 aaPredicted RBP2.39□□□□□ -2.03
PTCD3-216ENST00000487043 U3KQK5 164 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 NBEAL1Q6ZS30 2694 aa2.39□□□□□ -2.03
PTCD3-216ENST00000487043 A8MWV9 139 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 D6R8Y8 96 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 NUPR1O60356 82 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 PPP1R17O96001 155 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 C3orf79P0CE67 100 aa2.38□□□□□ -2.03
PTCD3-216ENST00000487043 MIFP14174 115 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms