RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 SPRR4Q96PI1 79 aa0.41□□□□□ -2.34
SMC4-215ENST00000484799 NCOR2Q9Y618 2525 aa0.41□□□□□ -2.34
SMC4-215ENST00000484799 LAMC1P11047 1609 aa0.4□□□□□ -2.35
SMC4-215ENST00000484799 ATP6V1G2-DDX39BF2Z307 99 aa0.4□□□□□ -2.35
SMC4-215ENST00000484799 NDUFC1O43677 76 aa0.4□□□□□ -2.35
SMC4-215ENST00000484799 BCE1O60756 84 aa0.4□□□□□ -2.35
SMC4-215ENST00000484799 SAA2P0DJI9 122 aaPredicted RBP0.4□□□□□ -2.35
SMC4-215ENST00000484799 TP53AIP1Q9HCN2 124 aa0.4□□□□□ -2.35
SMC4-215ENST00000484799 BTAF1O14981 1849 aa0.4□□□□□ -2.35
SMC4-215ENST00000484799 CNTLNQ9NXG0 1405 aa0.39□□□□□ -2.35
SMC4-215ENST00000484799 ANKRD17O75179 2603 aaKnown RBP0.39□□□□□ -2.35
SMC4-215ENST00000484799 FAT4Q6V0I7 4981 aa0.39□□□□□ -2.35
SMC4-215ENST00000484799 MYO7BQ6PIF6 2116 aa0.39□□□□□ -2.35
SMC4-215ENST00000484799 Q8IZM0 81 aa0.39□□□□□ -2.35
SMC4-215ENST00000484799 AP4S1Q9Y587 144 aa0.39□□□□□ -2.35
SMC4-215ENST00000484799 GOLGA4Q13439 2230 aaKnown RBP0.39□□□□□ -2.35
SMC4-215ENST00000484799 ABCC5O15440 1437 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 NSD3Q9BZ95 1437 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 NHSL1Q5SYE7 1610 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 GAPVD1Q14C86 1478 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 hADV29S1A0JD25 119 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 PHGR1C9JFL3 82 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 M0R3E3 92 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 UBA52P62987 128 aaKnown RBP0.38□□□□□ -2.35
SMC4-215ENST00000484799 SEC11AP67812 179 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 PRO1933Q9H354 126 aa0.38□□□□□ -2.35
SMC4-215ENST00000484799 MAGI1Q96QZ7 1491 aaPredicted RBP0.37□□□□□ -2.35
SMC4-215ENST00000484799 FYCO1Q9BQS8 1478 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 TRBV6-1A0A0K0K1D8 114 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 A0A1B0GWA3 101 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 PIGYQ3MUY2 71 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 ARHGEF12Q9NZN5 1544 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 UBR5O95071 2799 aaPredicted RBP0.37□□□□□ -2.35
SMC4-215ENST00000484799 AKAP6Q13023 2319 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 SYNE2Q8WXH0 6885 aaKnown RBP0.37□□□□□ -2.35
SMC4-215ENST00000484799 VPS8Q8N3P4 1428 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 SCN7AQ01118 1682 aa0.37□□□□□ -2.35
SMC4-215ENST00000484799 ADGRL2O95490 1459 aa0.36□□□□□ -2.35
SMC4-215ENST00000484799 I3L2K1 104 aa0.36□□□□□ -2.35
SMC4-215ENST00000484799 LINC00032P0C843 101 aa0.36□□□□□ -2.35
SMC4-215ENST00000484799 S100A10P60903 97 aa0.36□□□□□ -2.35
SMC4-215ENST00000484799 C10orf113Q5VZT2 155 aa0.36□□□□□ -2.35
SMC4-215ENST00000484799 NUP188Q5SRE5 1749 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 TEX14Q8IWB6 1497 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 PAPPAQ13219 1627 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 HIVEP3Q5T1R4 2406 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 PRDM15P57071 1507 aaPredicted RBP0.35□□□□□ -2.35
SMC4-215ENST00000484799 FAM223BA6NKX1 122 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 GNGT2O14610 69 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 WFDC2Q14508 124 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 LINC00846Q9NV44 126 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 U3KQA8 63 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 SYNE1Q8NF91 8797 aaKnown RBP0.35□□□□□ -2.35
SMC4-215ENST00000484799 NCOR1O75376 2440 aa0.35□□□□□ -2.35
SMC4-215ENST00000484799 DOPEY2Q9Y3R5 2298 aa0.34□□□□□ -2.35
SMC4-215ENST00000484799 CFDP00746 253 aaPredicted RBP0.34□□□□□ -2.36
SMC4-215ENST00000484799 PDCD11Q14690 1871 aaKnown RBP0.34□□□□□ -2.36
SMC4-215ENST00000484799 SFTA2Q6UW10 78 aa0.34□□□□□ -2.36
SMC4-215ENST00000484799 VAMP8Q9BV40 100 aa0.34□□□□□ -2.36
SMC4-215ENST00000484799 POLA1P09884 1462 aaPredicted RBP0.34□□□□□ -2.36
SMC4-215ENST00000484799 CSMD3Q7Z407 3707 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 PKDREJQ9NTG1 2253 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 ATOX1O00244 68 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 Q5VSD8 79 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 DPY30Q9C005 99 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 PTPN13Q12923 2485 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 PTPRQQ9UMZ3 2332 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 MLH3Q9UHC1 1453 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 COL4A6Q14031 1691 aa0.33□□□□□ -2.36
SMC4-215ENST00000484799 MDN1Q9NU22 5596 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 LRP1Q07954 4544 aaKnown RBP0.32□□□□□ -2.36
SMC4-215ENST00000484799 SPTBN1Q01082 2364 aaKnown RBP0.32□□□□□ -2.36
SMC4-215ENST00000484799 TRBV7-4A0A0J9YYF1 115 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 M0R143 59 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 MPC2O95563 127 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 S100A8P05109 93 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 LINC01600Q96MT4 127 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 CACFD1Q9UGQ2 172 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 C1orf167Q5SNV9 1468 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 HRNRQ86YZ3 2850 aaPredicted RBP0.32□□□□□ -2.36
SMC4-215ENST00000484799 CHD6Q8TD26 2715 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 USF3Q68DE3 2245 aa0.32□□□□□ -2.36
SMC4-215ENST00000484799 ABCA2Q9BZC7 2435 aa0.31□□□□□ -2.36
SMC4-215ENST00000484799 DMBT1Q9UGM3 2413 aaPredicted RBP0.31□□□□□ -2.36
SMC4-215ENST00000484799 TRBV25-1A0A075B6N4 114 aa0.31□□□□□ -2.36
SMC4-215ENST00000484799 PMCHL1Q16048 86 aa0.31□□□□□ -2.36
SMC4-215ENST00000484799 DEFB123Q8N688 67 aa0.31□□□□□ -2.36
SMC4-215ENST00000484799 PMCHL2Q9BQD1 86 aa0.31□□□□□ -2.36
SMC4-215ENST00000484799 TULP4Q9NRJ4 1543 aa0.31□□□□□ -2.36
SMC4-215ENST00000484799 GVINP1Q7Z2Y8 2422 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 A0A0G2JMZ2 1700 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 XRN1Q8IZH2 1706 aaKnown RBP0.3□□□□□ -2.36
SMC4-215ENST00000484799 C10orf142B7Z368 130 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 MT-ATP8P03928 68 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 FDCSPQ8NFU4 85 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 TRGV9Q99603 122 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 ANKRD36BQ8N2N9 1353 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 FSIP2Q5CZC0 6907 aa0.3□□□□□ -2.36
SMC4-215ENST00000484799 ABCC2Q92887 1545 aa0.29□□□□□ -2.36
SMC4-215ENST00000484799 SETBP1Q9Y6X0 1596 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms