RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 CCL25O15444 150 aa9.63□□□□□ -0.87
CLK3-204ENST00000483723 NOTCH1P46531 2555 aa9.63□□□□□ -0.87
CLK3-204ENST00000483723 IGHV3OR16-9A0A0B4J2B5 98 aa9.62□□□□□ -0.87
CLK3-204ENST00000483723 SMIM1B2RUZ4 78 aa9.62□□□□□ -0.87
CLK3-204ENST00000483723 MGAM2Q2M2H8 2515 aa9.62□□□□□ -0.87
CLK3-204ENST00000483723 A0A1B0GV90 55 aa9.62□□□□□ -0.87
CLK3-204ENST00000483723 ZFAND6Q6FIF0 208 aa9.62□□□□□ -0.87
CLK3-204ENST00000483723 CEND1Q8N111 149 aa9.62□□□□□ -0.87
CLK3-204ENST00000483723 SPANXB1Q9NS25 103 aaPredicted RBP9.62□□□□□ -0.87
CLK3-204ENST00000483723 TRAV10A0A0B4J240 114 aa9.61□□□□□ -0.87
CLK3-204ENST00000483723 SCGB1D4Q6XE38 83 aa9.61□□□□□ -0.87
CLK3-204ENST00000483723 B9D2Q9BPU9 175 aa9.61□□□□□ -0.87
CLK3-204ENST00000483723 C10orf126Q8N4M7 172 aa9.6□□□□□ -0.87
CLK3-204ENST00000483723 TENM3Q9P273 2699 aa9.6□□□□□ -0.87
CLK3-204ENST00000483723 SS18Q15532 418 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 NDUFA12Q9UI09 145 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 A0A087WZ39 114 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 IGKV3OR2-268A0A0C4DH90 116 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 A0A0J9YXY3 114 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 GCSHP23434 173 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 FXYD2P54710 66 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 ESRGQ1W209 222 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 LINC00269Q8N2A0 174 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 Q8N3U1 123 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 HIST1H4GQ99525 98 aa9.59□□□□□ -0.87
CLK3-204ENST00000483723 NDUFA1O15239 70 aa9.58□□□□□ -0.88
CLK3-204ENST00000483723 LINC01561Q8N1V8 128 aa9.58□□□□□ -0.88
CLK3-204ENST00000483723 A6NDN8 102 aa9.57□□□□□ -0.88
CLK3-204ENST00000483723 TAX1BP3O14907 124 aa9.57□□□□□ -0.88
CLK3-204ENST00000483723 PRR34Q9NV39 138 aa9.57□□□□□ -0.88
CLK3-204ENST00000483723 ANGP03950 147 aaKnown RBP9.56□□□□□ -0.88
CLK3-204ENST00000483723 REG3AQ06141 175 aa9.56□□□□□ -0.88
CLK3-204ENST00000483723 HUWE1Q7Z6Z7 4374 aaKnown RBP9.56□□□□□ -0.88
CLK3-204ENST00000483723 K7EP13 123 aa9.56□□□□□ -0.88
CLK3-204ENST00000483723 SRSF9Q13242 221 aaKnown RBP eCLIP9.56□□□□□ -0.88
CLK3-204ENST00000483723 C15orf53Q8NAA6 179 aa9.56□□□□□ -0.88
CLK3-204ENST00000483723 LITAFQ99732 161 aa9.56□□□□□ -0.88
CLK3-204ENST00000483723 TIMM17BO60830 172 aa9.55□□□□□ -0.88
CLK3-204ENST00000483723 IGHV3-30P01768 117 aa9.55□□□□□ -0.88
CLK3-204ENST00000483723 IGHV3-30-5P0DP03 117 aa9.55□□□□□ -0.88
CLK3-204ENST00000483723 CD164L2Q6UWJ8 174 aa9.54□□□□□ -0.88
CLK3-204ENST00000483723 C5orf38Q86SI9 138 aa9.54□□□□□ -0.88
CLK3-204ENST00000483723 ZNF625Q96I27 306 aaPredicted RBP9.54□□□□□ -0.88
CLK3-204ENST00000483723 COX11Q9Y6N1 276 aa9.54□□□□□ -0.88
CLK3-204ENST00000483723 MEGF8Q7Z7M0 2845 aa9.54□□□□□ -0.88
CLK3-204ENST00000483723 A0A1B0GWB2 263 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 TMEM238C9JI98 176 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 CLPSL2Q6UWE3 100 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 WFDC10BQ8IUB3 73 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 XCL1P47992 114 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 PTTG1IPP53801 180 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 ENHOQ6UWT2 76 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 Q6ZVH6 145 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 COX7B2Q8TF08 81 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 CHCHD10Q8WYQ3 142 aaPredicted RBP9.53□□□□□ -0.88
CLK3-204ENST00000483723 Q9H8V8 135 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 KLK12Q9UKR0 248 aa9.53□□□□□ -0.88
CLK3-204ENST00000483723 NHLRC4P0CG21 123 aaPredicted RBP9.52□□□□□ -0.89
CLK3-204ENST00000483723 SMIM13P0DJ93 91 aa9.52□□□□□ -0.89
CLK3-204ENST00000483723 SPANXDQ9BXN6 97 aa9.52□□□□□ -0.89
CLK3-204ENST00000483723 SPANXCQ9NY87 97 aa9.52□□□□□ -0.89
CLK3-204ENST00000483723 HERV-K104P63124 156 aa9.51□□□□□ -0.89
CLK3-204ENST00000483723 ADAMTSL4-AS1Q5T5F5 129 aa9.51□□□□□ -0.89
CLK3-204ENST00000483723 IGHV3-33P01772 117 aa9.51□□□□□ -0.89
CLK3-204ENST00000483723 FOXI1Q12951 378 aa9.51□□□□□ -0.89
CLK3-204ENST00000483723 NHP2Q9NX24 153 aaKnown RBP9.51□□□□□ -0.89
CLK3-204ENST00000483723 TRAV8-4A0A0B4J246 113 aa9.5□□□□□ -0.89
CLK3-204ENST00000483723 LINC01556Q5JQF7 62 aa9.5□□□□□ -0.89
CLK3-204ENST00000483723 TMEM238LA0A1B0GVL6 79 aa9.49□□□□□ -0.89
CLK3-204ENST00000483723 C9orf118A6NHY6 69 aa9.49□□□□□ -0.89
CLK3-204ENST00000483723 A6NJY4 79 aa9.49□□□□□ -0.89
CLK3-204ENST00000483723 MUSTN1Q8IVN3 82 aa9.49□□□□□ -0.89
CLK3-204ENST00000483723 DNAH9Q9NYC9 4486 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 IGLV10-54A0A075B6I4 117 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 COX7A2LO14548 114 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 DNAH10OSP0CZ25 163 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 CIRBPQ14011 172 aaKnown RBP9.48□□□□□ -0.89
CLK3-204ENST00000483723 MIAQ16674 131 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 SFTA2Q6UW10 78 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 Q8IZM0 81 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 LINC00588Q9Y4M8 146 aa9.48□□□□□ -0.89
CLK3-204ENST00000483723 IFITM1P13164 125 aa9.47□□□□□ -0.89
CLK3-204ENST00000483723 KIAA0087Q14695 138 aa9.47□□□□□ -0.89
CLK3-204ENST00000483723 TOMM7Q9P0U1 55 aa9.47□□□□□ -0.89
CLK3-204ENST00000483723 GAGE12HA6NDE8 117 aa9.46□□□□□ -0.89
CLK3-204ENST00000483723 IGLL5B9A064 214 aa9.46□□□□□ -0.89
CLK3-204ENST00000483723 K7ERJ3 54 aa9.46□□□□□ -0.89
CLK3-204ENST00000483723 RPL24P83731 157 aaKnown RBP9.46□□□□□ -0.89
CLK3-204ENST00000483723 KRTAP26-1Q6PEX3 210 aa9.46□□□□□ -0.89
CLK3-204ENST00000483723 RAB37Q96AX2 223 aa9.46□□□□□ -0.89
CLK3-204ENST00000483723 UBE2WQ96B02 151 aa9.46□□□□□ -0.89
CLK3-204ENST00000483723 KLK5Q9Y337 293 aaPredicted RBP9.46□□□□□ -0.89
CLK3-204ENST00000483723 CFC1BP0CG36 223 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 CFC1P0CG37 223 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 PPDPFQ9H3Y8 114 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 A4D1N5 150 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 CRPP02741 224 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 CCL18P55774 89 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 C6orf226Q5I0X4 101 aa9.45□□□□□ -0.9
CLK3-204ENST00000483723 UPK3BQ9BT76 320 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms