RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 ZNF469Q96JG9 3925 aaPredicted RBP9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 TRAV25A0A0B4J276 109 aa9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 RPL28P46779 137 aaKnown RBP9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 KRTAP10-9P60411 292 aa9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 PRIMA1Q86XR5 153 aa9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 C4orf3Q8WVX3 66 aa9.71□□□□□ -0.85
HLA-DMA-208ENST00000477541 COX6A2Q02221 97 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 HIST2H2BDQ6DRA6 164 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 IGHV3-38A0A0C4DH36 116 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 F5H768 121 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 K7EQD1 137 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 BAALC-AS2P0C853 105 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 DYNLRB2Q8TF09 96 aa9.7□□□□□ -0.86
HLA-DMA-208ENST00000477541 SOSTDC1Q6X4U4 206 aa9.69□□□□□ -0.86
HLA-DMA-208ENST00000477541 CDC42SE2Q9NRR3 84 aa9.69□□□□□ -0.86
HLA-DMA-208ENST00000477541 Q9UF83 564 aa9.69□□□□□ -0.86
HLA-DMA-208ENST00000477541 SLURP1P55000 103 aa9.68□□□□□ -0.86
HLA-DMA-208ENST00000477541 A0A096LNT2 108 aa9.68□□□□□ -0.86
HLA-DMA-208ENST00000477541 FAM236AA0A1B0GUQ0 79 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 FAM236BA0A1B0GV22 79 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 H0YGX0 51 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 UQCRQO14949 82 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 CRPP02741 224 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 DEFB114Q30KQ6 69 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 C5orf38Q86SI9 138 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 SPATA3Q8NHX4 192 aa9.67□□□□□ -0.86
HLA-DMA-208ENST00000477541 CHCHD5Q9BSY4 110 aa9.66□□□□□ -0.86
HLA-DMA-208ENST00000477541 ACANP16112 2415 aa9.66□□□□□ -0.86
HLA-DMA-208ENST00000477541 AKAP6Q13023 2319 aa9.65□□□□□ -0.86
HLA-DMA-208ENST00000477541 MALP21145 153 aa9.65□□□□□ -0.86
HLA-DMA-208ENST00000477541 CMC4P56277 68 aaPredicted RBP9.65□□□□□ -0.86
HLA-DMA-208ENST00000477541 C3orf22Q8N5N4 141 aa9.65□□□□□ -0.86
HLA-DMA-208ENST00000477541 TMEM243Q9BU79 118 aa9.65□□□□□ -0.86
HLA-DMA-208ENST00000477541 MAP1AP78559 2803 aaPredicted RBP9.64□□□□□ -0.87
HLA-DMA-208ENST00000477541 TRAV13-1A0A0B4J241 112 aa9.64□□□□□ -0.87
HLA-DMA-208ENST00000477541 UBE2L6O14933 153 aa9.64□□□□□ -0.87
HLA-DMA-208ENST00000477541 LINC00694P0DN24 101 aa9.64□□□□□ -0.87
HLA-DMA-208ENST00000477541 LINC00526Q96FQ7 95 aa9.64□□□□□ -0.87
HLA-DMA-208ENST00000477541 MDFIQ99750 246 aa9.64□□□□□ -0.87
HLA-DMA-208ENST00000477541 TRGV1A0A0A0MS02 117 aa9.63□□□□□ -0.87
HLA-DMA-208ENST00000477541 NTM-AS1Q6ZSK4 140 aa9.63□□□□□ -0.87
HLA-DMA-208ENST00000477541 STHQ8IWL8 128 aa9.63□□□□□ -0.87
HLA-DMA-208ENST00000477541 SMCR5Q8TEV8 140 aa9.63□□□□□ -0.87
HLA-DMA-208ENST00000477541 COX7B2Q8TF08 81 aa9.63□□□□□ -0.87
HLA-DMA-208ENST00000477541 NSD1Q96L73 2696 aaPredicted RBP9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 DNAL4O96015 105 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 C1orf158Q8N1D5 194 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 SMIM20Q8N5G0 67 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 C22orf24Q9Y442 160 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 STAB1Q9NY15 2570 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 ATOX1O00244 68 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 PRM2P04554 102 aa9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 HIST1H4AP62805 103 aaKnown RBP9.62□□□□□ -0.87
HLA-DMA-208ENST00000477541 SORL1Q92673 2214 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 NBEAL1Q6ZS30 2694 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 IBA57-AS1B1ANH7 110 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 DEFB136Q30KP8 78 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 TMEM86BQ8N661 226 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 OBSCN-AS1Q96MR7 158 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 CSPG4Q6UVK1 2322 aa9.61□□□□□ -0.87
HLA-DMA-208ENST00000477541 TRBV6-4A0A1B0GX49 114 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 ODF3L2Q3SX64 289 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 C9orf153Q5TBE3 101 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 FAM218AQ96MZ4 157 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 SND1-IT1Q9HBX3 110 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 COL6A5A8TX70 2615 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 JMJD1CQ15652 2540 aa9.6□□□□□ -0.87
HLA-DMA-208ENST00000477541 A0A0U1RRA0 63 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 NDUFA7O95182 113 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 XCL2Q9UBD3 114 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 COX7CP15954 63 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 Q6JHZ5 121 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 C18orf65Q6ZTR6 163 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 C16orf74Q96GX8 76 aa9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 FLNAP21333 2647 aaKnown RBP9.59□□□□□ -0.87
HLA-DMA-208ENST00000477541 GAGE2AQ6NT46 116 aa9.58□□□□□ -0.88
HLA-DMA-208ENST00000477541 MIR7-3HGQ8N6C7 128 aa9.58□□□□□ -0.88
HLA-DMA-208ENST00000477541 Q96MF0 132 aa9.58□□□□□ -0.88
HLA-DMA-208ENST00000477541 A0A1B0GX51 115 aa9.57□□□□□ -0.88
HLA-DMA-208ENST00000477541 IGHV4-31P0DP07 118 aa9.57□□□□□ -0.88
HLA-DMA-208ENST00000477541 LINC00337Q8N6G1 96 aa9.57□□□□□ -0.88
HLA-DMA-208ENST00000477541 IGKV2-28A0A075B6P5 120 aa9.56□□□□□ -0.88
HLA-DMA-208ENST00000477541 IGKV2D-28P01615 120 aa9.56□□□□□ -0.88
HLA-DMA-208ENST00000477541 CRYGAP11844 174 aa9.56□□□□□ -0.88
HLA-DMA-208ENST00000477541 Q6ZTI0 123 aa9.56□□□□□ -0.88
HLA-DMA-208ENST00000477541 LINC01561Q8N1V8 128 aa9.56□□□□□ -0.88
HLA-DMA-208ENST00000477541 KLK5Q9Y337 293 aaPredicted RBP9.56□□□□□ -0.88
HLA-DMA-208ENST00000477541 A0A087WZ39 114 aa9.55□□□□□ -0.88
HLA-DMA-208ENST00000477541 C11orf44Q8N8P7 122 aa9.55□□□□□ -0.88
HLA-DMA-208ENST00000477541 SMIM11BQ8TCY0 68 aa9.55□□□□□ -0.88
HLA-DMA-208ENST00000477541 FN1P02751 2386 aaKnown RBP9.55□□□□□ -0.88
HLA-DMA-208ENST00000477541 IGHV3OR16-9A0A0B4J2B5 98 aa9.54□□□□□ -0.88
HLA-DMA-208ENST00000477541 LY6G6DO95868 133 aa9.54□□□□□ -0.88
HLA-DMA-208ENST00000477541 S100A7L2Q5SY68 101 aa9.54□□□□□ -0.88
HLA-DMA-208ENST00000477541 LRRC75A-AS1Q8N1F1 130 aa9.54□□□□□ -0.88
HLA-DMA-208ENST00000477541 FBN1P35555 2871 aaKnown RBP9.54□□□□□ -0.88
HLA-DMA-208ENST00000477541 A0A1W2PRX2 142 aa9.53□□□□□ -0.88
HLA-DMA-208ENST00000477541 CCL18P55774 89 aa9.53□□□□□ -0.88
HLA-DMA-208ENST00000477541 LINC00158P58513 81 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms