RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, human

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-222	ENST00000474742	UBL5	Q9BZL1	73 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	NMES1	Q9C002	83 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	FXYD6	Q9H0Q3	95 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	ABCA4	P78363	2273 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	WDR90	Q96KV7	1748 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	ABCA3	Q99758	1704 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	MARF1	Q9Y4F3	1742 aa	Known RBP	0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	KIF14	Q15058	1648 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	CC2D2A	Q9P2K1	1620 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	URB2	Q14146	1524 aa	Known RBP	0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	KCP	Q6ZWJ8	1503 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	KDM5D	Q9BY66	1539 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	PDCD11	Q14690	1871 aa	Known RBP	0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	PLXNA1	Q9UIW2	1896 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	KNTC1	P50748	2209 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	PPL	O60437	1756 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	KIF21A	Q7Z4S6	1674 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	TOPAZ1	Q8N9V7	1692 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	FLG2	Q5D862	2391 aa	Predicted RBP	0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	NAV3	Q8IVL0	2385 aa		0.37	□□□□□ -2.35
HDAC9-222	ENST00000474742	ADGRB2	O60241	1585 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	SI	P14410	1827 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	MRC1	P22897	1456 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	ERVK-7	P63135	1459 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	LRRC9	Q6ZRR7	1453 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CHD1	O14646	1710 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	COL5A3	P25940	1745 aa	Predicted RBP	0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	COL24A1	Q17RW2	1714 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	SHANK3	Q9BYB0	1731 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	NRXN2	Q9P2S2	1712 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	EML5	Q05BV3	1969 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	MED13L	Q71F56	2210 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	PTPN23	Q9H3S7	1636 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742		A0A087WVE0	104 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	TRGV1	A0A0A0MS02	117 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	SPTY2D1-AS1	A0A0U1RR47	76 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742		I3L3M4	83 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742		J3QKU1	62 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CCL22	O00626	93 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	PRH1	P02810	166 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	FCER1G	P30273	86 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	COX6A2	Q02221	97 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	WFDC2	Q14508	124 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	UNQ6190/PRO20217	Q6UXQ8	127 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742		Q6ZRX8	168 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	SSBP3-AS1	Q7Z2R9	100 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	C5orf56	Q8N8D9	126 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	C9orf163	Q8N9P6	203 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	PLAC4	Q8WY50	150 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	ZNF625	Q96I27	306 aa	Predicted RBP	0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	LINC00208	Q96KT6	92 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	LINC01600	Q96MT4	127 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	WFDC6	Q9BQY6	131 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CYSTM1	Q9H1C7	97 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CDC42SE2	Q9NRR3	84 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CRIPT	Q9P021	101 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	LINC00474	Q9P2X8	69 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	LINC01558	Q9Y6Z2	57 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CUX1	P39880	1505 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	PRDM15	P57071	1507 aa	Predicted RBP	0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	MAP3K1	Q13233	1512 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	EHBP1L1	Q8N3D4	1523 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	UGGT2	Q9NYU1	1516 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	CASZ1	Q86V15	1759 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	ZC3H13	Q5T200	1668 aa	Known RBP	0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	RREB1	Q92766	1687 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	MYH4	Q9Y623	1939 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	BTAF1	O14981	1849 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	AFDN	P55196	1824 aa	Known RBP	0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	PATJ	Q8NI35	1801 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	ERCC6L2	Q5T890	1561 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	DIP2C	Q9Y2E4	1556 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	SETBP1	Q9Y6X0	1596 aa		0.36	□□□□□ -2.35
HDAC9-222	ENST00000474742	MON2	Q7Z3U7	1717 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	MED14	O60244	1454 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	RALGAPB	Q86X10	1494 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	NRXN1	Q9ULB1	1477 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	ZDBF2	Q9HCK1	2354 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	UBR3	Q6ZT12	1888 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	ABCA1	O95477	2261 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	MYO3A	Q8NEV4	1616 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	DOPEY2	Q9Y3R5	2298 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	CR1	P17927	2039 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	RGPD8	O14715	1765 aa	Predicted RBP	0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	STRC	Q7RTU9	1775 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	RGPD5	Q99666	1765 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	DLEC1	Q9Y238	1755 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	EFCAB5	A4FU69	1503 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	ADGRB3	O60242	1522 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	CDK13	Q14004	1512 aa	Known RBP	0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	MUC16	Q8WXI7	14507 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	ZNF142	P52746	1687 aa	Predicted RBP	0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	QRICH2	Q9H0J4	1663 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	TRBV7-4	A0A0J9YYF1	115 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742		H7BZZ5	65 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	SFTA3	P0C7M3	94 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	ZNF137P	P52743	207 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	DEFB103A	P81534	67 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	NREP	Q16612	68 aa		0.35	□□□□□ -2.35
HDAC9-222	ENST00000474742	SPINK9	Q5DT21	86 aa		0.35	□□□□□ -2.35

Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms