RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, human

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-222	ENST00000474742	AEBP2	Q6ZN18	517 aa	Predicted RBP	7.55	□□□□□ -1.2
HDAC9-222	ENST00000474742	CHIC1	Q5VXU3	224 aa		7.16	□□□□□ -1.26
HDAC9-222	ENST00000474742	SENP3	Q9H4L4	574 aa	Predicted RBP	6.54	□□□□□ -1.36
HDAC9-222	ENST00000474742	PHF23	Q9BUL5	403 aa	Predicted RBP	6.42	□□□□□ -1.38
HDAC9-222	ENST00000474742	FOXD1	Q16676	465 aa		6.06	□□□□□ -1.44
HDAC9-222	ENST00000474742	MSH5	O43196	834 aa		5.77	□□□□□ -1.49
HDAC9-222	ENST00000474742	POTED	Q86YR6	584 aa		5.77	□□□□□ -1.49
HDAC9-222	ENST00000474742	PIAS4	Q8N2W9	510 aa	Predicted RBP	5.7	□□□□□ -1.5
HDAC9-222	ENST00000474742	PLPPR3	Q6T4P5	718 aa		5.68	□□□□□ -1.5
HDAC9-222	ENST00000474742	ADRA2B	P18089	450 aa		5.59	□□□□□ -1.51
HDAC9-222	ENST00000474742	PPP6R1	Q9UPN7	881 aa		5.57	□□□□□ -1.52
HDAC9-222	ENST00000474742	SCAF1	Q9H7N4	1312 aa	Known RBP	5.19	□□□□□ -1.58
HDAC9-222	ENST00000474742	MAPK8IP2	Q13387	824 aa	Predicted RBP	5.15	□□□□□ -1.59
HDAC9-222	ENST00000474742	DMRT2	Q9Y5R5	561 aa		5.13	□□□□□ -1.59
HDAC9-222	ENST00000474742	DCAF8L1	A6NGE4	600 aa		5.07	□□□□□ -1.6
HDAC9-222	ENST00000474742	CACNB1	Q02641	598 aa	Predicted RBP	5.05	□□□□□ -1.6
HDAC9-222	ENST00000474742	PPP4R3CP	Q6ZMV5	832 aa		4.95	□□□□□ -1.62
HDAC9-222	ENST00000474742	CNKSR2	Q8WXI2	1034 aa		4.89	□□□□□ -1.63
HDAC9-222	ENST00000474742	HOXD11	P31277	338 aa	Predicted RBP	4.88	□□□□□ -1.63
HDAC9-222	ENST00000474742	RNF39	Q9H2S5	420 aa		4.86	□□□□□ -1.63
HDAC9-222	ENST00000474742	RNF216	Q9NWF9	866 aa	Predicted RBP	4.85	□□□□□ -1.63
HDAC9-222	ENST00000474742	C1QBP	Q07021	282 aa	Known RBP	4.82	□□□□□ -1.64
HDAC9-222	ENST00000474742	NCBP3	Q53F19	620 aa	Known RBP	4.79	□□□□□ -1.64
HDAC9-222	ENST00000474742	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	4.76	□□□□□ -1.65
HDAC9-222	ENST00000474742	DNAJC5B	Q9UF47	199 aa		4.72	□□□□□ -1.65
HDAC9-222	ENST00000474742	NPM3	O75607	178 aa	Known RBP	4.64	□□□□□ -1.67
HDAC9-222	ENST00000474742	CAPN15	O75808	1086 aa		4.62	□□□□□ -1.67
HDAC9-222	ENST00000474742		U3KPZ7	1027 aa	Predicted RBP	4.57	□□□□□ -1.68
HDAC9-222	ENST00000474742	SPINK5	Q9NQ38	1064 aa	Predicted RBP	4.54	□□□□□ -1.68
HDAC9-222	ENST00000474742	APLP2	Q06481	763 aa		4.53	□□□□□ -1.68
HDAC9-222	ENST00000474742	POTEH	Q6S545	545 aa		4.53	□□□□□ -1.68
HDAC9-222	ENST00000474742	TRH	P20396	242 aa	Predicted RBP	4.52	□□□□□ -1.69
HDAC9-222	ENST00000474742	DSG3	P32926	999 aa		4.52	□□□□□ -1.69
HDAC9-222	ENST00000474742	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	4.48	□□□□□ -1.69
HDAC9-222	ENST00000474742	ABCB7	O75027	752 aa		4.48	□□□□□ -1.69
HDAC9-222	ENST00000474742	HNRNPUL2	Q1KMD3	747 aa	Known RBP	4.48	□□□□□ -1.69
HDAC9-222	ENST00000474742	ZNF219	Q9P2Y4	722 aa	Predicted RBP	4.47	□□□□□ -1.69
HDAC9-222	ENST00000474742	KCNA4	P22459	653 aa		4.46	□□□□□ -1.7
HDAC9-222	ENST00000474742	SAMD1	Q6SPF0	538 aa	Predicted RBP	4.43	□□□□□ -1.7
HDAC9-222	ENST00000474742	SLC4A2	P04920	1241 aa		4.42	□□□□□ -1.7
HDAC9-222	ENST00000474742	RBM42	Q9BTD8	480 aa	Known RBP	4.39	□□□□□ -1.71
HDAC9-222	ENST00000474742	POLA2	Q14181	598 aa		4.34	□□□□□ -1.71
HDAC9-222	ENST00000474742	MYCN	P04198	464 aa	Predicted RBP	4.32	□□□□□ -1.72
HDAC9-222	ENST00000474742	CHRDL2	Q6WN34	429 aa		4.31	□□□□□ -1.72
HDAC9-222	ENST00000474742	ZBTB12	Q9Y330	459 aa	Predicted RBP	4.26	□□□□□ -1.73
HDAC9-222	ENST00000474742	SLC4A1AP	Q9BWU0	796 aa	Known RBP	4.24	□□□□□ -1.73
HDAC9-222	ENST00000474742	AKT1S1	Q96B36	256 aa		4.23	□□□□□ -1.73
HDAC9-222	ENST00000474742	FOXD4L1	Q9NU39	408 aa		4.22	□□□□□ -1.73
HDAC9-222	ENST00000474742	HAX1	O00165	279 aa		4.2	□□□□□ -1.74
HDAC9-222	ENST00000474742	OSCAR	Q8IYS5	282 aa		4.2	□□□□□ -1.74
HDAC9-222	ENST00000474742	SP7	Q8TDD2	431 aa	Predicted RBP	4.2	□□□□□ -1.74
HDAC9-222	ENST00000474742	REM2	Q8IYK8	340 aa	Predicted RBP	4.19	□□□□□ -1.74
HDAC9-222	ENST00000474742	ATF5	Q9Y2D1	282 aa	Predicted RBP	4.18	□□□□□ -1.74
HDAC9-222	ENST00000474742	PIP4P2	Q8N4L2	257 aa		4.17	□□□□□ -1.74
HDAC9-222	ENST00000474742	PITPNM1	O00562	1244 aa		4.14	□□□□□ -1.75
HDAC9-222	ENST00000474742	FBLN2	P98095	1184 aa		4.14	□□□□□ -1.75
HDAC9-222	ENST00000474742	CLEC11A	Q9Y240	323 aa		4.11	□□□□□ -1.75
HDAC9-222	ENST00000474742	FXR2	P51116	673 aa	Known RBP eCLIP	4.1	□□□□□ -1.75
HDAC9-222	ENST00000474742	SPDYE2B	A6NHP3	402 aa		4.09	□□□□□ -1.75
HDAC9-222	ENST00000474742	SPDYE6	P0CI01	402 aa		4.09	□□□□□ -1.75
HDAC9-222	ENST00000474742	SPDYE2	Q495Y8	402 aa		4.09	□□□□□ -1.75
HDAC9-222	ENST00000474742	ATXN8OS	P0DMR3	200 aa		4.08	□□□□□ -1.76
HDAC9-222	ENST00000474742	PRKAR2A	P13861	404 aa	Known RBP	4.07	□□□□□ -1.76
HDAC9-222	ENST00000474742	SPDYE1	Q8NFV5	336 aa	Predicted RBP	4.07	□□□□□ -1.76
HDAC9-222	ENST00000474742	ZNF692	Q9BU19	519 aa	Predicted RBP	4.06	□□□□□ -1.76
HDAC9-222	ENST00000474742	ZBTB22	O15209	634 aa		4.05	□□□□□ -1.76
HDAC9-222	ENST00000474742	EVX2	Q03828	476 aa		4.02	□□□□□ -1.77
HDAC9-222	ENST00000474742	PRR29	P0C7W0	189 aa		4.01	□□□□□ -1.77
HDAC9-222	ENST00000474742	CHADL	Q6NUI6	762 aa		3.99	□□□□□ -1.77
HDAC9-222	ENST00000474742	PABPN1	Q86U42	306 aa	Known RBP eCLIP	3.98	□□□□□ -1.77
HDAC9-222	ENST00000474742	C19orf67	A6NJJ6	358 aa		3.97	□□□□□ -1.77
HDAC9-222	ENST00000474742	GABBR2	O75899	941 aa		3.97	□□□□□ -1.77
HDAC9-222	ENST00000474742	MKRN4P	Q13434	485 aa	Predicted RBP	3.97	□□□□□ -1.77
HDAC9-222	ENST00000474742	SSUH2	Q9Y2M2	353 aa		3.97	□□□□□ -1.77
HDAC9-222	ENST00000474742	LHX8	Q68G74	356 aa		3.95	□□□□□ -1.78
HDAC9-222	ENST00000474742	CD44	P16070	742 aa	Known RBP	3.93	□□□□□ -1.78
HDAC9-222	ENST00000474742	DCBLD2	Q96PD2	775 aa		3.92	□□□□□ -1.78
HDAC9-222	ENST00000474742	FARP1	Q9Y4F1	1045 aa	Predicted RBP	3.91	□□□□□ -1.78
HDAC9-222	ENST00000474742	CLCN6	P51797	869 aa		3.88	□□□□□ -1.79
HDAC9-222	ENST00000474742	ZRANB1	Q9UGI0	708 aa		3.88	□□□□□ -1.79
HDAC9-222	ENST00000474742	PAK3	O75914	559 aa	Predicted RBP	3.87	□□□□□ -1.79
HDAC9-222	ENST00000474742	STAG3	Q9UJ98	1225 aa		3.87	□□□□□ -1.79
HDAC9-222	ENST00000474742	PLSCR2	Q9NRY7	297 aa		3.86	□□□□□ -1.79
HDAC9-222	ENST00000474742	POTEI	P0CG38	1075 aa		3.83	□□□□□ -1.8
HDAC9-222	ENST00000474742	SPDYE4	A6NLX3	237 aa		3.82	□□□□□ -1.8
HDAC9-222	ENST00000474742	ZNF579	Q8NAF0	562 aa	Known RBP	3.82	□□□□□ -1.8
HDAC9-222	ENST00000474742	NPM1	P06748	294 aa	Known RBP eCLIP	3.81	□□□□□ -1.8
HDAC9-222	ENST00000474742	CREBZF	Q9NS37	354 aa		3.81	□□□□□ -1.8
HDAC9-222	ENST00000474742	GALR2	O43603	387 aa	Predicted RBP	3.8	□□□□□ -1.8
HDAC9-222	ENST00000474742	CSRNP3	Q8WYN3	585 aa		3.8	□□□□□ -1.8
HDAC9-222	ENST00000474742	EHMT2	Q96KQ7	1210 aa		3.79	□□□□□ -1.8
HDAC9-222	ENST00000474742	PHF12	Q96QT6	1004 aa		3.79	□□□□□ -1.8
HDAC9-222	ENST00000474742	PLEKHG5	O94827	1062 aa		3.75	□□□□□ -1.81
HDAC9-222	ENST00000474742	OTUD5	Q96G74	571 aa		3.74	□□□□□ -1.81
HDAC9-222	ENST00000474742	TSPYL2	Q9H2G4	693 aa	Predicted RBP	3.74	□□□□□ -1.81
HDAC9-222	ENST00000474742	POTEM	A6NI47	508 aa		3.73	□□□□□ -1.81
HDAC9-222	ENST00000474742	MAMSTR	Q6ZN01	415 aa		3.73	□□□□□ -1.81
HDAC9-222	ENST00000474742	METRN	Q9UJH8	293 aa		3.73	□□□□□ -1.81
HDAC9-222	ENST00000474742	POTEG	Q6S5H5	508 aa		3.72	□□□□□ -1.81
HDAC9-222	ENST00000474742	SLC39A7	Q92504	469 aa		3.72	□□□□□ -1.81

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