RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 CHCHD5Q9BSY4 110 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 CMYA5Q8N3K9 4069 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 SMIM1B2RUZ4 78 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 IGLL5B9A064 214 aa8.5□□□□□ -1.05
SYNE1-222ENST00000474655 NDUFA1O15239 70 aa8.49□□□□□ -1.05
SYNE1-222ENST00000474655 K7EP34 96 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 TIMM17BO60830 172 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 GTF2H5Q6ZYL4 71 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 NAA38Q9BRA0 125 aaKnown RBP8.48□□□□□ -1.05
SYNE1-222ENST00000474655 GAGE10A6NGK3 116 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 FABP2P12104 132 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 SPANXDQ9BXN6 97 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 SPANXCQ9NY87 97 aa8.48□□□□□ -1.05
SYNE1-222ENST00000474655 IGHV3OR16-9A0A0B4J2B5 98 aa8.46□□□□□ -1.05
SYNE1-222ENST00000474655 CFC1BP0CG36 223 aa8.46□□□□□ -1.05
SYNE1-222ENST00000474655 CFC1P0CG37 223 aa8.46□□□□□ -1.05
SYNE1-222ENST00000474655 DNAH3Q8TD57 4116 aa8.46□□□□□ -1.05
SYNE1-222ENST00000474655 COL6A5A8TX70 2615 aa8.46□□□□□ -1.06
SYNE1-222ENST00000474655 RBX1P62877 108 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 RPL24P83731 157 aaKnown RBP8.45□□□□□ -1.06
SYNE1-222ENST00000474655 MRPL23Q16540 153 aaKnown RBP8.45□□□□□ -1.06
SYNE1-222ENST00000474655 SH2D6Q7Z4S9 175 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 MUSTN1Q8IVN3 82 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 SPCS1Q9Y6A9 102 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 LINC00959A0A1B0GUT2 108 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 G3V4G9 280 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 ADAMTSL4-AS1Q5T5F5 129 aa8.45□□□□□ -1.06
SYNE1-222ENST00000474655 ZNF625Q96I27 306 aaPredicted RBP8.45□□□□□ -1.06
SYNE1-222ENST00000474655 C11orf68Q9H3H3 251 aaKnown RBP8.45□□□□□ -1.06
SYNE1-222ENST00000474655 A4D1N5 150 aa8.44□□□□□ -1.06
SYNE1-222ENST00000474655 MIAQ16674 131 aa8.44□□□□□ -1.06
SYNE1-222ENST00000474655 ANK2Q01484 3957 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 A0A087WZ39 114 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 A0A096LPF7 62 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 A0A0B4J2C4 111 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 Q9H8V8 135 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 PGPEP1Q9NXJ5 209 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 H3BNG1 76 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 APOMO95445 188 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 IFITM1P13164 125 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 HERV-K104P63124 156 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 ICOSQ9Y6W8 199 aa8.43□□□□□ -1.06
SYNE1-222ENST00000474655 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-222ENST00000474655 TMEM262E9PQX1 116 aa8.42□□□□□ -1.06
SYNE1-222ENST00000474655 EIF4EBP3O60516 100 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-222ENST00000474655 TSPAN13O95857 204 aa8.42□□□□□ -1.06
SYNE1-222ENST00000474655 RETNQ9HD89 108 aa8.42□□□□□ -1.06
SYNE1-222ENST00000474655 PRO1854Q9UHT4 67 aa8.42□□□□□ -1.06
SYNE1-222ENST00000474655 CIRBPQ14011 172 aaKnown RBP8.41□□□□□ -1.06
SYNE1-222ENST00000474655 LELP1Q5T871 98 aa8.41□□□□□ -1.06
SYNE1-222ENST00000474655 LINC01561Q8N1V8 128 aa8.41□□□□□ -1.06
SYNE1-222ENST00000474655 SS18Q15532 418 aa8.4□□□□□ -1.06
SYNE1-222ENST00000474655 PPDPFQ9H3Y8 114 aa8.4□□□□□ -1.06
SYNE1-222ENST00000474655 IGKV3OR2-268A0A0C4DH90 116 aa8.4□□□□□ -1.07
SYNE1-222ENST00000474655 PRSS2P07478 247 aa8.4□□□□□ -1.07
SYNE1-222ENST00000474655 HTN3P15516 51 aa8.4□□□□□ -1.07
SYNE1-222ENST00000474655 COX7B2Q8TF08 81 aa8.4□□□□□ -1.07
SYNE1-222ENST00000474655 IGHV3-33P01772 117 aa8.39□□□□□ -1.07
SYNE1-222ENST00000474655 TENM3Q9P273 2699 aa8.38□□□□□ -1.07
SYNE1-222ENST00000474655 SFTA2Q6UW10 78 aa8.38□□□□□ -1.07
SYNE1-222ENST00000474655 NOTCH1P46531 2555 aa8.37□□□□□ -1.07
SYNE1-222ENST00000474655 LYPD5Q6UWN5 251 aa8.37□□□□□ -1.07
SYNE1-222ENST00000474655 LINC00269Q8N2A0 174 aa8.37□□□□□ -1.07
SYNE1-222ENST00000474655 COPS9Q8WXC6 57 aa8.37□□□□□ -1.07
SYNE1-222ENST00000474655 NBEAL1Q6ZS30 2694 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 REG3AQ06141 175 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 LYRM7Q5U5X0 104 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 CD164L2Q6UWJ8 174 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 Q6ZTC4 211 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 C5orf38Q86SI9 138 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 LINC00308Q8TCZ7 52 aa8.36□□□□□ -1.07
SYNE1-222ENST00000474655 XCL1P47992 114 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 KPRPQ5T749 579 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-222ENST00000474655 Q8N3U1 123 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 DAND5Q8N907 189 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 PRR34Q9NV39 138 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 ERG28Q9UKR5 140 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 A0A0J9YWU9 116 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 F8W1H4 67 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 ANGP03950 147 aaKnown RBP8.35□□□□□ -1.07
SYNE1-222ENST00000474655 Q8IZM0 81 aa8.35□□□□□ -1.07
SYNE1-222ENST00000474655 TRBV20-1A0A075B6N2 111 aa8.34□□□□□ -1.07
SYNE1-222ENST00000474655 H3BMG7 143 aa8.34□□□□□ -1.07
SYNE1-222ENST00000474655 MEIG1Q5JSS6 88 aa8.34□□□□□ -1.07
SYNE1-222ENST00000474655 CLPSL2Q6UWE3 100 aa8.34□□□□□ -1.07
SYNE1-222ENST00000474655 TM2D3Q9BRN9 247 aa8.34□□□□□ -1.07
SYNE1-222ENST00000474655 TOMM7Q9P0U1 55 aa8.34□□□□□ -1.07
SYNE1-222ENST00000474655 LOC107984156A0A0G2JMH3 177 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 SOSTDC1Q6X4U4 206 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 ARL17AQ8IVW1 177 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 CHCHD10Q8WYQ3 142 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-222ENST00000474655 PRO0461Q9UI25 63 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 TRBV30A0A0K0K1B3 111 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 IBA57-AS1B1ANH7 110 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 NPC2P61916 151 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 SPATA25Q9BR10 227 aa8.33□□□□□ -1.08
SYNE1-222ENST00000474655 K7EIL1 84 aa8.32□□□□□ -1.08
SYNE1-222ENST00000474655 C11orf45Q8TAV5 145 aa8.32□□□□□ -1.08
SYNE1-222ENST00000474655 COX7A2LO14548 114 aa8.31□□□□□ -1.08
SYNE1-222ENST00000474655 FOXI1Q12951 378 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms