RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 C10orf126Q8N4M7 172 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 ATP6V0E2Q8NHE4 81 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 NDUFA12Q9UI09 145 aa5.33□□□□□ -1.56
COL6A3-208ENST00000468792 FBN1P35555 2871 aaKnown RBP5.33□□□□□ -1.56
COL6A3-208ENST00000468792 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.32□□□□□ -1.56
COL6A3-208ENST00000468792 LOC100131303A0A0U1RQF7 123 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 F5H768 121 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 ATP5G1P05496 136 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 IFITM1P13164 125 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 GYPEP15421 78 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 SFTA2Q6UW10 78 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 LITAFQ99732 161 aa5.32□□□□□ -1.56
COL6A3-208ENST00000468792 TRAV8-3A0A0A6YYJ7 113 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 A0A0B4J2C4 111 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 SMIM1B2RUZ4 78 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 H3BNG1 76 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 PAX4O43316 350 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 DAD1P61803 113 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 HERV-K104P63124 156 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 COX6A2Q02221 97 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 RNASE13Q5GAN3 156 aaKnown RBP5.31□□□□□ -1.56
COL6A3-208ENST00000468792 C3orf56Q8N813 242 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 COPS9Q8WXC6 57 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 RAB37Q96AX2 223 aa5.31□□□□□ -1.56
COL6A3-208ENST00000468792 IGHV3OR16-9A0A0B4J2B5 98 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 SPINK8P0C7L1 97 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 CIRBPQ14011 172 aaKnown RBP5.3□□□□□ -1.56
COL6A3-208ENST00000468792 MIAQ16674 131 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 LCE2AQ5TA79 106 aaPredicted RBP5.3□□□□□ -1.56
COL6A3-208ENST00000468792 LYRM7Q5U5X0 104 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 CHCHD5Q9BSY4 110 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 SPCS1Q9Y6A9 102 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 PKD1L1Q8TDX9 2849 aa5.3□□□□□ -1.56
COL6A3-208ENST00000468792 A0A087WZ39 114 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 TRAV13-1A0A0B4J241 112 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 K7ERJ3 54 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 CFC1BP0CG36 223 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 CFC1P0CG37 223 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 KRTAP10-11P60412 298 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 GAGE6Q13070 117 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 MRPL23Q16540 153 aaKnown RBP5.29□□□□□ -1.56
COL6A3-208ENST00000468792 ZNF625Q96I27 306 aaPredicted RBP5.29□□□□□ -1.56
COL6A3-208ENST00000468792 C11orf68Q9H3H3 251 aaKnown RBP5.29□□□□□ -1.56
COL6A3-208ENST00000468792 PRO1854Q9UHT4 67 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 MAST4O15021 2626 aa5.29□□□□□ -1.56
COL6A3-208ENST00000468792 STAB1Q9NY15 2570 aa5.28□□□□□ -1.56
COL6A3-208ENST00000468792 IGLV4-60A0A075B6I1 120 aa5.28□□□□□ -1.56
COL6A3-208ENST00000468792 TRBV20-1A0A075B6N2 111 aa5.28□□□□□ -1.56
COL6A3-208ENST00000468792 IGHV3-64A0A075B6Q5 118 aa5.28□□□□□ -1.56
COL6A3-208ENST00000468792 F8W1H4 67 aa5.28□□□□□ -1.56
COL6A3-208ENST00000468792 MUSTN1Q8IVN3 82 aa5.28□□□□□ -1.56
COL6A3-208ENST00000468792 BAHCC1Q9P281 2608 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 LINC00959A0A1B0GUT2 108 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 A4D1N5 150 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 TSPAN13O95857 204 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 RBX1P62877 108 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 LELP1Q5T871 98 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 PRIMA1Q86XR5 153 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 CELA1Q9UNI1 258 aa5.27□□□□□ -1.57
COL6A3-208ENST00000468792 IGHV3-33P01772 117 aa5.26□□□□□ -1.57
COL6A3-208ENST00000468792 SS18Q15532 418 aa5.26□□□□□ -1.57
COL6A3-208ENST00000468792 ADAMTSL4-AS1Q5T5F5 129 aa5.26□□□□□ -1.57
COL6A3-208ENST00000468792 Q9H8V8 135 aa5.26□□□□□ -1.57
COL6A3-208ENST00000468792 ICOSQ9Y6W8 199 aa5.26□□□□□ -1.57
COL6A3-208ENST00000468792 COL6A5A8TX70 2615 aa5.25□□□□□ -1.57
COL6A3-208ENST00000468792 TRBV30A0A0K0K1B3 111 aa5.25□□□□□ -1.57
COL6A3-208ENST00000468792 APOMO95445 188 aa5.25□□□□□ -1.57
COL6A3-208ENST00000468792 LORP23490 312 aaPredicted RBP5.25□□□□□ -1.57
COL6A3-208ENST00000468792 CD164L2Q6UWJ8 174 aa5.25□□□□□ -1.57
COL6A3-208ENST00000468792 COX7B2Q8TF08 81 aa5.25□□□□□ -1.57
COL6A3-208ENST00000468792 ERG28Q9UKR5 140 aa5.25□□□□□ -1.57
COL6A3-208ENST00000468792 A0A096LPF7 62 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 IBA57-AS1B1ANH7 110 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 TMEM262E9PQX1 116 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 M0QXV9 152 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 DEFB4AO15263 64 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 PRSS2P07478 247 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 Q8IZM0 81 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 LINC00308Q8TCZ7 52 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 LINC01600Q96MT4 127 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 NAA38Q9BRA0 125 aaKnown RBP5.24□□□□□ -1.57
COL6A3-208ENST00000468792 PRR34Q9NV39 138 aa5.24□□□□□ -1.57
COL6A3-208ENST00000468792 HUWE1Q7Z6Z7 4374 aaKnown RBP5.24□□□□□ -1.57
COL6A3-208ENST00000468792 K7ERU9 68 aa5.23□□□□□ -1.57
COL6A3-208ENST00000468792 CXCL5P42830 114 aa5.23□□□□□ -1.57
COL6A3-208ENST00000468792 OCIAD2Q56VL3 154 aa5.23□□□□□ -1.57
COL6A3-208ENST00000468792 MUC7Q8TAX7 377 aa5.23□□□□□ -1.57
COL6A3-208ENST00000468792 PRO0461Q9UI25 63 aa5.23□□□□□ -1.57
COL6A3-208ENST00000468792 LOC107984156A0A0G2JMH3 177 aa5.22□□□□□ -1.57
COL6A3-208ENST00000468792 H3BMG7 143 aa5.22□□□□□ -1.57
COL6A3-208ENST00000468792 H3BS24 57 aa5.22□□□□□ -1.57
COL6A3-208ENST00000468792 MEIG1Q5JSS6 88 aa5.22□□□□□ -1.57
COL6A3-208ENST00000468792 KPRPQ5T749 579 aaPredicted RBP5.22□□□□□ -1.57
COL6A3-208ENST00000468792 LYPD5Q6UWN5 251 aa5.22□□□□□ -1.57
COL6A3-208ENST00000468792 ARL17AQ8IVW1 177 aa5.22□□□□□ -1.57
COL6A3-208ENST00000468792 NBEAL1Q6ZS30 2694 aa5.21□□□□□ -1.57
COL6A3-208ENST00000468792 TRAV8-4A0A0B4J246 113 aa5.21□□□□□ -1.58
COL6A3-208ENST00000468792 COX6CP09669 75 aa5.21□□□□□ -1.58
COL6A3-208ENST00000468792 REG3AQ06141 175 aa5.21□□□□□ -1.58
COL6A3-208ENST00000468792 COX17Q14061 63 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms