RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 HIGD1BQ9P298 99 aa13□□□□□ -0.33
SMC4-209ENST00000468653 ESRGQ1W209 222 aa12.99□□□□□ -0.33
SMC4-209ENST00000468653 LINC00269Q8N2A0 174 aa12.99□□□□□ -0.33
SMC4-209ENST00000468653 HUWE1Q7Z6Z7 4374 aaKnown RBP12.99□□□□□ -0.33
SMC4-209ENST00000468653 SS18Q15532 418 aa12.99□□□□□ -0.33
SMC4-209ENST00000468653 SCGB1D4Q6XE38 83 aa12.97□□□□□ -0.33
SMC4-209ENST00000468653 IGLL5B9A064 214 aa12.96□□□□□ -0.34
SMC4-209ENST00000468653 REG3AQ06141 175 aa12.96□□□□□ -0.34
SMC4-209ENST00000468653 HSD52Q0P140 79 aa12.96□□□□□ -0.34
SMC4-209ENST00000468653 WFDC10BQ8IUB3 73 aa12.96□□□□□ -0.34
SMC4-209ENST00000468653 CCL25O15444 150 aa12.95□□□□□ -0.34
SMC4-209ENST00000468653 SMIM1B2RUZ4 78 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 IGHV3-30P01768 117 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 IGHV3-33P01772 117 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 IGHV3-30-5P0DP03 117 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 XCL1P47992 114 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 LBHQ53QV2 105 aaPredicted RBP12.94□□□□□ -0.34
SMC4-209ENST00000468653 BVES-AS1Q5T3Y7 98 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 KLK12Q9UKR0 248 aa12.94□□□□□ -0.34
SMC4-209ENST00000468653 IGHV3OR16-9A0A0B4J2B5 98 aa12.93□□□□□ -0.34
SMC4-209ENST00000468653 IGLV5-39A0A0G2JS06 123 aa12.93□□□□□ -0.34
SMC4-209ENST00000468653 DNHD1Q96M86 4753 aa12.93□□□□□ -0.34
SMC4-209ENST00000468653 NDUFA12Q9UI09 145 aa12.92□□□□□ -0.34
SMC4-209ENST00000468653 C5orf38Q86SI9 138 aa12.92□□□□□ -0.34
SMC4-209ENST00000468653 ZFAND6Q6FIF0 208 aa12.91□□□□□ -0.34
SMC4-209ENST00000468653 HIST1H4GQ99525 98 aa12.91□□□□□ -0.34
SMC4-209ENST00000468653 A0A087WZ39 114 aa12.9□□□□□ -0.34
SMC4-209ENST00000468653 CHCHD10Q8WYQ3 142 aaPredicted RBP12.9□□□□□ -0.34
SMC4-209ENST00000468653 IGLV10-54A0A075B6I4 117 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 TAL2Q16559 108 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 PRR34Q9NV39 138 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 COL7A1Q02388 2944 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 CRPP02741 224 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 GCSHP23434 173 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 CCL18P55774 89 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 COL5A1-AS1Q5SY13 56 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 CD164L2Q6UWJ8 174 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 ORAOV1Q8WV07 137 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 STAB2Q8WWQ8 2551 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 DNAH9Q9NYC9 4486 aa12.89□□□□□ -0.35
SMC4-209ENST00000468653 C10orf126Q8N4M7 172 aa12.88□□□□□ -0.35
SMC4-209ENST00000468653 SRSF9Q13242 221 aaKnown RBP eCLIP12.87□□□□□ -0.35
SMC4-209ENST00000468653 ENHOQ6UWT2 76 aa12.87□□□□□ -0.35
SMC4-209ENST00000468653 UBE2WQ96B02 151 aa12.87□□□□□ -0.35
SMC4-209ENST00000468653 A0A0J9YXY3 114 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 NDUFA1O15239 70 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 LINC01556Q5JQF7 62 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 CEND1Q8N111 149 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 LINC00588Q9Y4M8 146 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 COX7B2Q8TF08 81 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 TOMM7Q9P0U1 55 aa12.86□□□□□ -0.35
SMC4-209ENST00000468653 COX7A2LO14548 114 aa12.85□□□□□ -0.35
SMC4-209ENST00000468653 Q9H8V8 135 aa12.85□□□□□ -0.35
SMC4-209ENST00000468653 LINC01561Q8N1V8 128 aa12.84□□□□□ -0.35
SMC4-209ENST00000468653 SPANXB1Q9NS25 103 aaPredicted RBP12.84□□□□□ -0.35
SMC4-209ENST00000468653 PTTG1IPP53801 180 aa12.84□□□□□ -0.35
SMC4-209ENST00000468653 TM2D2Q9BX73 214 aa12.84□□□□□ -0.35
SMC4-209ENST00000468653 TRAV8-4A0A0B4J246 113 aa12.83□□□□□ -0.36
SMC4-209ENST00000468653 GAGE12HA6NDE8 117 aa12.83□□□□□ -0.36
SMC4-209ENST00000468653 TMEM238C9JI98 176 aa12.83□□□□□ -0.36
SMC4-209ENST00000468653 MALP21145 153 aa12.83□□□□□ -0.36
SMC4-209ENST00000468653 A6NDN8 102 aa12.82□□□□□ -0.36
SMC4-209ENST00000468653 DNAH10OSP0CZ25 163 aa12.82□□□□□ -0.36
SMC4-209ENST00000468653 FXYD2P54710 66 aa12.82□□□□□ -0.36
SMC4-209ENST00000468653 FOXI1Q12951 378 aa12.82□□□□□ -0.36
SMC4-209ENST00000468653 MIAQ16674 131 aa12.82□□□□□ -0.36
SMC4-209ENST00000468653 MEGF8Q7Z7M0 2845 aa12.81□□□□□ -0.36
SMC4-209ENST00000468653 ZNF625Q96I27 306 aaPredicted RBP12.81□□□□□ -0.36
SMC4-209ENST00000468653 PRSS2P07478 247 aa12.8□□□□□ -0.36
SMC4-209ENST00000468653 HERV-K104P63124 156 aa12.8□□□□□ -0.36
SMC4-209ENST00000468653 K7EP13 123 aa12.79□□□□□ -0.36
SMC4-209ENST00000468653 C6orf226Q5I0X4 101 aa12.79□□□□□ -0.36
SMC4-209ENST00000468653 NUPR2A6NF83 97 aa12.79□□□□□ -0.36
SMC4-209ENST00000468653 CIRBPQ14011 172 aaKnown RBP12.79□□□□□ -0.36
SMC4-209ENST00000468653 APLNQ9ULZ1 77 aa12.79□□□□□ -0.36
SMC4-209ENST00000468653 KLK5Q9Y337 293 aaPredicted RBP12.79□□□□□ -0.36
SMC4-209ENST00000468653 TIMM17BO60830 172 aa12.78□□□□□ -0.36
SMC4-209ENST00000468653 LITAFQ99732 161 aa12.78□□□□□ -0.36
SMC4-209ENST00000468653 UPK3BQ9BT76 320 aa12.78□□□□□ -0.36
SMC4-209ENST00000468653 Q8IZM0 81 aa12.77□□□□□ -0.36
SMC4-209ENST00000468653 A0A1B0GV90 55 aa12.76□□□□□ -0.37
SMC4-209ENST00000468653 APOMO95445 188 aa12.76□□□□□ -0.37
SMC4-209ENST00000468653 MEIG1Q5JSS6 88 aa12.76□□□□□ -0.37
SMC4-209ENST00000468653 TMEM238LA0A1B0GVL6 79 aa12.76□□□□□ -0.37
SMC4-209ENST00000468653 A6NJY4 79 aa12.76□□□□□ -0.37
SMC4-209ENST00000468653 ADAMTSL4-AS1Q5T5F5 129 aa12.76□□□□□ -0.37
SMC4-209ENST00000468653 NHP2Q9NX24 153 aaKnown RBP12.76□□□□□ -0.37
SMC4-209ENST00000468653 SFTA2Q6UW10 78 aa12.75□□□□□ -0.37
SMC4-209ENST00000468653 C1orf43Q9BWL3 253 aa12.75□□□□□ -0.37
SMC4-209ENST00000468653 SPANXDQ9BXN6 97 aa12.75□□□□□ -0.37
SMC4-209ENST00000468653 SPANXCQ9NY87 97 aa12.75□□□□□ -0.37
SMC4-209ENST00000468653 SMIM13P0DJ93 91 aa12.74□□□□□ -0.37
SMC4-209ENST00000468653 CFAP161Q6P656 301 aa12.74□□□□□ -0.37
SMC4-209ENST00000468653 Q6ZVH6 145 aa12.74□□□□□ -0.37
SMC4-209ENST00000468653 UBE2DNLQ8IWF7 75 aa12.74□□□□□ -0.37
SMC4-209ENST00000468653 MUSTN1Q8IVN3 82 aa12.74□□□□□ -0.37
SMC4-209ENST00000468653 PRKDCP78527 4128 aaKnown RBP12.73□□□□□ -0.37
SMC4-209ENST00000468653 IGKV2D-24A0A075B6R9 120 aa12.73□□□□□ -0.37
SMC4-209ENST00000468653 A0A0U1RRA0 63 aa12.73□□□□□ -0.37
SMC4-209ENST00000468653 TAX1BP3O14907 124 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms