RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 NRXN1Q9ULB1 1477 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 F8WEM9 126 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 LY6G6CO95867 125 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 HMGN2P05204 90 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 RPL37P61927 97 aaKnown RBP1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 Q6ZRX8 168 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 LINC00643Q86TS7 51 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 ZMYM4Q5VZL5 1548 aa1.91□□□□□ -2.1
CCDC88A-206ENST00000430086 GVQW2A0A096LPI5 108 aaPredicted RBP1.9□□□□□ -2.11
CCDC88A-206ENST00000430086 PIN1P1O15428 100 aa1.9□□□□□ -2.11
CCDC88A-206ENST00000430086 ARMS2P0C7Q2 107 aa1.9□□□□□ -2.11
CCDC88A-206ENST00000430086 KRTAP21-3Q3LHN1 58 aa1.9□□□□□ -2.11
CCDC88A-206ENST00000430086 KIF21AQ7Z4S6 1674 aa1.9□□□□□ -2.11
CCDC88A-206ENST00000430086 IFT172Q9UG01 1749 aa1.89□□□□□ -2.11
CCDC88A-206ENST00000430086 LEPROTL1O95214 131 aa1.89□□□□□ -2.11
CCDC88A-206ENST00000430086 WFDC2Q14508 124 aa1.89□□□□□ -2.11
CCDC88A-206ENST00000430086 LINC00846Q9NV44 126 aa1.89□□□□□ -2.11
CCDC88A-206ENST00000430086 C10orf142B7Z368 130 aa1.88□□□□□ -2.11
CCDC88A-206ENST00000430086 D6R8Y8 96 aa1.88□□□□□ -2.11
CCDC88A-206ENST00000430086 SPINT3P49223 89 aa1.88□□□□□ -2.11
CCDC88A-206ENST00000430086 MUSTN1Q8IVN3 82 aa1.88□□□□□ -2.11
CCDC88A-206ENST00000430086 LINC01600Q96MT4 127 aa1.88□□□□□ -2.11
CCDC88A-206ENST00000430086 MED13LQ71F56 2210 aa1.88□□□□□ -2.11
CCDC88A-206ENST00000430086 WNK3Q9BYP7 1800 aa1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 PRB1P04280 392 aa1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 Q6ZSA8 131 aa1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 TMEM263Q8WUH6 116 aaKnown RBP1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 SPRR4Q96PI1 79 aa1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 PSENENQ9NZ42 101 aa1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 RAPGEF6Q8TEU7 1601 aa1.87□□□□□ -2.11
CCDC88A-206ENST00000430086 PDCD11Q14690 1871 aaKnown RBP1.86□□□□□ -2.11
CCDC88A-206ENST00000430086 FLG2Q5D862 2391 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-206ENST00000430086 NCOA6Q14686 2063 aaPredicted RBP1.86□□□□□ -2.11
CCDC88A-206ENST00000430086 ABCA1O95477 2261 aa1.86□□□□□ -2.11
CCDC88A-206ENST00000430086 A0A087WVE0 104 aa1.85□□□□□ -2.11
CCDC88A-206ENST00000430086 PROK2Q9HC23 129 aa1.85□□□□□ -2.11
CCDC88A-206ENST00000430086 SMCO4Q9NRQ5 59 aa1.85□□□□□ -2.11
CCDC88A-206ENST00000430086 SCN7AQ01118 1682 aa1.85□□□□□ -2.11
CCDC88A-206ENST00000430086 LRRC37A2A6NM11 1700 aa1.85□□□□□ -2.11
CCDC88A-206ENST00000430086 KCPQ6ZWJ8 1503 aa1.85□□□□□ -2.11
CCDC88A-206ENST00000430086 MAP2P11137 1827 aaKnown RBP1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 ANKARQ7Z5J8 1434 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 MYMXA0A1B0GTQ4 84 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 H3BUT2 72 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 K7EIL1 84 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 S100A3P33764 101 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 PLGLAQ15195 96 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 BVES-AS1Q5T3Y7 98 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 Q6JHZ5 121 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 KRTAP4-1Q9BYQ7 146 aa1.84□□□□□ -2.11
CCDC88A-206ENST00000430086 BTAF1O14981 1849 aa1.84□□□□□ -2.12
CCDC88A-206ENST00000430086 ABCC1P33527 1531 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 CUX1P39880 1505 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 IQCF6A8MYZ5 107 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 IGLC2P0DOY2 106 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 IGLC3P0DOY3 106 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 HAMPP81172 84 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 FDCSPQ8NFU4 85 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 LINC00472Q9H8W2 130 aa1.83□□□□□ -2.12
CCDC88A-206ENST00000430086 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.82□□□□□ -2.12
CCDC88A-206ENST00000430086 ARL14EPLP0DKL9 152 aa1.82□□□□□ -2.12
CCDC88A-206ENST00000430086 LRRC9Q6ZRR7 1453 aa1.82□□□□□ -2.12
CCDC88A-206ENST00000430086 NEXMIFQ5QGS0 1516 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 DIP2BQ9P265 1576 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 F5P12259 2224 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 TRBV6-1A0A0K0K1D8 114 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 CEBPZOSA8MTT3 80 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 G3V318 75 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 H0Y9P7 68 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 PDCD5O14737 125 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 GNGT1P63211 74 aa1.81□□□□□ -2.12
CCDC88A-206ENST00000430086 DEFA5Q01523 94 aa1.8□□□□□ -2.12
CCDC88A-206ENST00000430086 C10orf113Q5VZT2 155 aa1.8□□□□□ -2.12
CCDC88A-206ENST00000430086 UBE2DNLQ8IWF7 75 aa1.8□□□□□ -2.12
CCDC88A-206ENST00000430086 CNTRLQ7Z7A1 2325 aa1.8□□□□□ -2.12
CCDC88A-206ENST00000430086 ZNF236Q9UL36 1845 aa1.8□□□□□ -2.12
CCDC88A-206ENST00000430086 DEFB107AQ8IZN7 70 aa1.79□□□□□ -2.12
CCDC88A-206ENST00000430086 CCDC141Q6ZP82 1450 aa1.79□□□□□ -2.12
CCDC88A-206ENST00000430086 SSC5DA1L4H1 1573 aa1.79□□□□□ -2.12
CCDC88A-206ENST00000430086 MYH4Q9Y623 1939 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 NUP188Q5SRE5 1749 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 CFAP74Q9C0B2 1584 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 CCDC88BA6NC98 1476 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 SPINK9Q5DT21 86 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 C18orf32Q8TCD1 76 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 FBN3Q75N90 2809 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 ZDBF2Q9HCK1 2354 aa1.78□□□□□ -2.12
CCDC88A-206ENST00000430086 MYO7BQ6PIF6 2116 aa1.78□□□□□ -2.13
CCDC88A-206ENST00000430086 NCOA2Q15596 1464 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 C1orf167Q5SNV9 1468 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 KNTC1P50748 2209 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 SMIM31A0A1B0GVY4 71 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 SPATA8Q6RVD6 105 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 UBE2D4Q9Y2X8 147 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 RP1L1Q8IWN7 2480 aaPredicted RBP1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 UBR1Q8IWV7 1749 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 PTPN23Q9H3S7 1636 aa1.77□□□□□ -2.13
CCDC88A-206ENST00000430086 CFDP00746 253 aaPredicted RBP1.76□□□□□ -2.13
CCDC88A-206ENST00000430086 A0A1B0GUT8 65 aa1.75□□□□□ -2.13
CCDC88A-206ENST00000430086 ERICH3Q5RHP9 1530 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms