RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 COX11Q9Y6N1 276 aa10.82□□□□□ -0.68
SHOX2-202ENST00000425436 PAX4O43316 350 aa10.81□□□□□ -0.68
SHOX2-202ENST00000425436 HERVK_113P63121 156 aa10.81□□□□□ -0.68
SHOX2-202ENST00000425436 SCGB1D4Q6XE38 83 aa10.81□□□□□ -0.68
SHOX2-202ENST00000425436 ATP6V0E2Q8NHE4 81 aa10.81□□□□□ -0.68
SHOX2-202ENST00000425436 CDC42SE2Q9NRR3 84 aa10.81□□□□□ -0.68
SHOX2-202ENST00000425436 LOC100131303A0A0U1RQF7 123 aa10.8□□□□□ -0.68
SHOX2-202ENST00000425436 GYPEP15421 78 aa10.8□□□□□ -0.68
SHOX2-202ENST00000425436 CEND1Q8N111 149 aa10.8□□□□□ -0.68
SHOX2-202ENST00000425436 HIST1H4GQ99525 98 aa10.8□□□□□ -0.68
SHOX2-202ENST00000425436 SH2D6Q7Z4S9 175 aa10.79□□□□□ -0.68
SHOX2-202ENST00000425436 IGLV5-45A0A087WSX0 123 aa10.79□□□□□ -0.68
SHOX2-202ENST00000425436 IGHV1-58A0A0C4DH39 117 aa10.79□□□□□ -0.68
SHOX2-202ENST00000425436 GCSHP23434 173 aa10.79□□□□□ -0.68
SHOX2-202ENST00000425436 PTTG1IPP53801 180 aa10.79□□□□□ -0.68
SHOX2-202ENST00000425436 TAX1BP3O14907 124 aa10.78□□□□□ -0.68
SHOX2-202ENST00000425436 LINC00469Q8N7U9 141 aa10.78□□□□□ -0.68
SHOX2-202ENST00000425436 C15orf53Q8NAA6 179 aa10.78□□□□□ -0.68
SHOX2-202ENST00000425436 SMIM13P0DJ93 91 aa10.77□□□□□ -0.69
SHOX2-202ENST00000425436 RNASE13Q5GAN3 156 aaKnown RBP10.77□□□□□ -0.69
SHOX2-202ENST00000425436 SPANXB1Q9NS25 103 aaPredicted RBP10.77□□□□□ -0.69
SHOX2-202ENST00000425436 KMT2CQ8NEZ4 4911 aaKnown RBP10.77□□□□□ -0.69
SHOX2-202ENST00000425436 A0A096LPF7 62 aa10.76□□□□□ -0.69
SHOX2-202ENST00000425436 TMEM238LA0A1B0GVL6 79 aa10.76□□□□□ -0.69
SHOX2-202ENST00000425436 A6NJY4 79 aa10.76□□□□□ -0.69
SHOX2-202ENST00000425436 H3BNG1 76 aa10.76□□□□□ -0.69
SHOX2-202ENST00000425436 LY6G6CO95867 125 aa10.76□□□□□ -0.69
SHOX2-202ENST00000425436 CHCHD5Q9BSY4 110 aa10.76□□□□□ -0.69
SHOX2-202ENST00000425436 IGHV3-30-3P0DP02 117 aa10.75□□□□□ -0.69
SHOX2-202ENST00000425436 SRSF9Q13242 221 aaKnown RBP eCLIP10.75□□□□□ -0.69
SHOX2-202ENST00000425436 A0A1B0GUV1 79 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 LINC00242Q5T6M2 205 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 LINC00476Q8WZB0 136 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 ICOSQ9Y6W8 199 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 DNAH1Q9P2D7 4330 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 ALMS1Q8TCU4 4167 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 TSPEAR-AS2P59090 65 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 GAGE6Q13070 117 aa10.74□□□□□ -0.69
SHOX2-202ENST00000425436 MRPL23Q16540 153 aaKnown RBP10.74□□□□□ -0.69
SHOX2-202ENST00000425436 VPS13DQ5THJ4 4388 aa10.73□□□□□ -0.69
SHOX2-202ENST00000425436 C9orf118A6NHY6 69 aa10.73□□□□□ -0.69
SHOX2-202ENST00000425436 FXYD2P54710 66 aa10.73□□□□□ -0.69
SHOX2-202ENST00000425436 SACSQ9NZJ4 4579 aa10.73□□□□□ -0.69
SHOX2-202ENST00000425436 TRAV13-1A0A0B4J241 112 aa10.72□□□□□ -0.69
SHOX2-202ENST00000425436 LCE6AA0A183 80 aa10.72□□□□□ -0.69
SHOX2-202ENST00000425436 TMEM238C9JI98 176 aa10.72□□□□□ -0.69
SHOX2-202ENST00000425436 CCL25O15444 150 aa10.72□□□□□ -0.69
SHOX2-202ENST00000425436 ESRGQ1W209 222 aa10.72□□□□□ -0.69
SHOX2-202ENST00000425436 CDKN2A-AS1Q9UH64 79 aa10.72□□□□□ -0.69
SHOX2-202ENST00000425436 UBE2DNLQ8IWF7 75 aa10.71□□□□□ -0.69
SHOX2-202ENST00000425436 VAMP3Q15836 100 aa10.7□□□□□ -0.7
SHOX2-202ENST00000425436 Q6ZVH6 145 aa10.7□□□□□ -0.7
SHOX2-202ENST00000425436 NDUFA12Q9UI09 145 aa10.7□□□□□ -0.7
SHOX2-202ENST00000425436 LINC00588Q9Y4M8 146 aa10.7□□□□□ -0.7
SHOX2-202ENST00000425436 HYDINQ4G0P3 5121 aa10.7□□□□□ -0.7
SHOX2-202ENST00000425436 IGHV3-64A0A075B6Q5 118 aa10.69□□□□□ -0.7
SHOX2-202ENST00000425436 IGLV5-39A0A0G2JS06 123 aa10.69□□□□□ -0.7
SHOX2-202ENST00000425436 SPINK8P0C7L1 97 aa10.69□□□□□ -0.7
SHOX2-202ENST00000425436 TRAV8-3A0A0A6YYJ7 113 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 A0A1B0GWB2 263 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 TMEM262E9PQX1 116 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 CCL18P55774 89 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 COX6A2Q02221 97 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 UBE2V1Q13404 147 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 LYPD5Q6UWN5 251 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
SHOX2-202ENST00000425436 TIMM17BO60830 172 aa10.68□□□□□ -0.7
SHOX2-202ENST00000425436 KMT2AQ03164 3969 aa10.67□□□□□ -0.7
SHOX2-202ENST00000425436 A0A0J9YXY3 114 aa10.67□□□□□ -0.7
SHOX2-202ENST00000425436 NDUFA1O15239 70 aa10.67□□□□□ -0.7
SHOX2-202ENST00000425436 CIRBPQ14011 172 aaKnown RBP10.67□□□□□ -0.7
SHOX2-202ENST00000425436 IGLV4-60A0A075B6I1 120 aa10.66□□□□□ -0.7
SHOX2-202ENST00000425436 IGHV3-30P01768 117 aa10.66□□□□□ -0.7
SHOX2-202ENST00000425436 IGHV3-30-5P0DP03 117 aa10.66□□□□□ -0.7
SHOX2-202ENST00000425436 RBX1P62877 108 aa10.66□□□□□ -0.7
SHOX2-202ENST00000425436 RPL24P83731 157 aaKnown RBP10.66□□□□□ -0.7
SHOX2-202ENST00000425436 C10orf126Q8N4M7 172 aa10.66□□□□□ -0.7
SHOX2-202ENST00000425436 SMIM1B2RUZ4 78 aa10.65□□□□□ -0.7
SHOX2-202ENST00000425436 SS18Q15532 418 aa10.65□□□□□ -0.7
SHOX2-202ENST00000425436 LELP1Q5T871 98 aa10.65□□□□□ -0.7
SHOX2-202ENST00000425436 GTF2H5Q6ZYL4 71 aa10.65□□□□□ -0.7
SHOX2-202ENST00000425436 H3BUT2 72 aa10.64□□□□□ -0.71
SHOX2-202ENST00000425436 K7EP13 123 aa10.64□□□□□ -0.71
SHOX2-202ENST00000425436 HERV-K104P63124 156 aa10.64□□□□□ -0.71
SHOX2-202ENST00000425436 LINC01561Q8N1V8 128 aa10.64□□□□□ -0.71
SHOX2-202ENST00000425436 RAB37Q96AX2 223 aa10.64□□□□□ -0.71
SHOX2-202ENST00000425436 RYR2Q92736 4967 aa10.64□□□□□ -0.71
SHOX2-202ENST00000425436 FABP2P12104 132 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 SFTA2Q6UW10 78 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 COPS9Q8WXC6 57 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 SPANXDQ9BXN6 97 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 SPANXCQ9NY87 97 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 LINC00959A0A1B0GUT2 108 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 A0A1W2PPM0 123 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 IFITM1P13164 125 aa10.63□□□□□ -0.71
SHOX2-202ENST00000425436 RYR3Q15413 4870 aa10.62□□□□□ -0.71
SHOX2-202ENST00000425436 A0A087WZ39 114 aa10.62□□□□□ -0.71
SHOX2-202ENST00000425436 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.62□□□□□ -0.71
SHOX2-202ENST00000425436 IGHV3OR16-9A0A0B4J2B5 98 aa10.62□□□□□ -0.71
SHOX2-202ENST00000425436 GAGE10A6NGK3 116 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms