RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 COX8AP10176 69 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 LGALS3P17931 250 aaKnown RBP4.11□□□□□ -1.75
HMGB3-202ENST00000419110 DDTP30046 118 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 TCTAP57738 103 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 CLPSL2Q6UWE3 100 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 CDC42SE2Q9NRR3 84 aa4.11□□□□□ -1.75
HMGB3-202ENST00000419110 KLK5Q9Y337 293 aaPredicted RBP4.11□□□□□ -1.75
HMGB3-202ENST00000419110 PRKDCP78527 4128 aaKnown RBP4.11□□□□□ -1.75
HMGB3-202ENST00000419110 IGLV4-60A0A075B6I1 120 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 IGLV5-45A0A087WSX0 123 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 IGLL5B9A064 214 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 CCL25O15444 150 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 CCL18P55774 89 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 SS18Q15532 418 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 LYPD5Q6UWN5 251 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 FAM19A3Q7Z5A8 133 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 UBE2DNLQ8IWF7 75 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 STPG4Q8N801 248 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 PLEKHB2Q96CS7 222 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 MIEN1Q9BRT3 115 aa4.1□□□□□ -1.75
HMGB3-202ENST00000419110 MRPS16Q9Y3D3 137 aaKnown RBP4.1□□□□□ -1.75
HMGB3-202ENST00000419110 COL7A1Q02388 2944 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 TMEM223A0PJW6 202 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 ZNF815PA8K554 130 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 DLEU1O43261 78 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 REG3AQ06141 175 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 WFDC10BQ8IUB3 73 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 FAM104AQ969W3 186 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 C14orf144Q96I85 54 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 MEGF8Q7Z7M0 2845 aa4.09□□□□□ -1.75
HMGB3-202ENST00000419110 IGHV3-64A0A075B6Q5 118 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 IGKV2D-26A0A0A0MRZ7 120 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 J3QQQ9 107 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 LEPROTO15243 131 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 IGHV3-30P01768 117 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 IGHV3-33P01772 117 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 SPINK8P0C7L1 97 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 IGHV3-30-3P0DP02 117 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 IGHV3-30-5P0DP03 117 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 MIAQ16674 131 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 LINC01556Q5JQF7 62 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 LINC00242Q5T6M2 205 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 SCGB1D4Q6XE38 83 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 LINC00269Q8N2A0 174 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 C10orf126Q8N4M7 172 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 CDKN2A-AS1Q9UH64 79 aa4.08□□□□□ -1.76
HMGB3-202ENST00000419110 IGHV1-58A0A0C4DH39 117 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 LINC00959A0A1B0GUT2 108 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 SMIM1B2RUZ4 78 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 M0R143 59 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 COX7A2LO14548 114 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 SIVA1O15304 175 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 DNAH10OSP0CZ25 163 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 XCL1P47992 114 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 ESRGQ1W209 222 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 SFTA2Q6UW10 78 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 PCP2Q8IVA1 136 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 BOD1L2Q8IYS8 172 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 CHCHD10Q8WYQ3 142 aaPredicted RBP4.07□□□□□ -1.76
HMGB3-202ENST00000419110 UBE2WQ96B02 151 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 RMI2Q96E14 147 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 UPK3BQ9BT76 320 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 TP73-AS1Q9UF72 201 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 KLK12Q9UKR0 248 aa4.07□□□□□ -1.76
HMGB3-202ENST00000419110 IGLV10-54A0A075B6I4 117 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 TRAV8-4A0A0B4J246 113 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 IGLV5-39A0A0G2JS06 123 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 MYMXA0A1B0GTQ4 84 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 LINC00587B1AMM8 73 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 TMEM238C9JI98 176 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 APOMO95445 188 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 MALP21145 153 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 TSPEAR-AS2P59090 65 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 HSD52Q0P140 79 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 LCE5AQ5TCM9 118 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 ZFAND6Q6FIF0 208 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 CD164L2Q6UWJ8 174 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 LINC01561Q8N1V8 128 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 C1orf43Q9BWL3 253 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 PRR34Q9NV39 138 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 HIGD1BQ9P298 99 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 NDUFA12Q9UI09 145 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 LINC00588Q9Y4M8 146 aa4.06□□□□□ -1.76
HMGB3-202ENST00000419110 DYNC2H1Q8NCM8 4307 aaKnown RBP4.05□□□□□ -1.76
HMGB3-202ENST00000419110 A0A087WZ39 114 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 TRAV8-3A0A0A6YYJ7 113 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 IGHV3OR16-9A0A0B4J2B5 98 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 K7EP13 123 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 NDUFA1O15239 70 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 PRSS2P07478 247 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 GCSHP23434 173 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 CXCL5P42830 114 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 TTC32Q5I0X7 151 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 CFAP161Q6P656 301 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 C2orf91Q6ZV80 131 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 COX7B2Q8TF08 81 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 ORAOV1Q8WV07 137 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 TTTY13Q9BZ97 58 aa4.05□□□□□ -1.76
HMGB3-202ENST00000419110 TOMM7Q9P0U1 55 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms