RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 H3BUA1 57 aa6.79□□□□□ -1.32
COL28A1-201ENST00000399429 JMJD1CQ15652 2540 aa6.79□□□□□ -1.32
COL28A1-201ENST00000399429 PCSK5Q92824 1860 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 IGHV4-28A0A0C4DH34 117 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 K7EMT4 169 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 RPL28P46779 137 aaKnown RBP6.78□□□□□ -1.32
COL28A1-201ENST00000399429 ZFYVE26Q68DK2 2539 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 RMI2Q96E14 147 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 LRCOL1A6NCL2 159 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 SMIM1B2RUZ4 78 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 CCKP06307 115 aa6.78□□□□□ -1.32
COL28A1-201ENST00000399429 CCL18P55774 89 aa6.77□□□□□ -1.33
COL28A1-201ENST00000399429 DEFB121Q5J5C9 76 aa6.77□□□□□ -1.33
COL28A1-201ENST00000399429 PRORYQ9H606 182 aa6.77□□□□□ -1.33
COL28A1-201ENST00000399429 SLURP1P55000 103 aa6.77□□□□□ -1.33
COL28A1-201ENST00000399429 SEC61GP60059 68 aa6.77□□□□□ -1.33
COL28A1-201ENST00000399429 FHL2Q14192 279 aa6.77□□□□□ -1.33
COL28A1-201ENST00000399429 RNF223E7ERA6 249 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 FUSP35637 526 aaKnown RBP eCLIP6.76□□□□□ -1.33
COL28A1-201ENST00000399429 C6orf99Q4VX62 202 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 LITAFQ99732 161 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 TRAV7A0A075B6U4 112 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 K7EQG2 157 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 NREPQ16612 68 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 IGHV4-59P01825 116 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 LINC00337Q8N6G1 96 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 CHCHD7Q9BUK0 85 aa6.76□□□□□ -1.33
COL28A1-201ENST00000399429 B4DSR2 109 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 ANGP03950 147 aaKnown RBP6.75□□□□□ -1.33
COL28A1-201ENST00000399429 PLA2G2CQ5R387 149 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 MAPK1IP1LQ8NDC0 245 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 DEFB105AQ8NG35 78 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 Q6ZTI0 123 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 LINC00336Q6ZUF6 198 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 Q9UF83 564 aa6.75□□□□□ -1.33
COL28A1-201ENST00000399429 GNLYP22749 145 aa6.74□□□□□ -1.33
COL28A1-201ENST00000399429 ZNF575Q86XF7 245 aa6.74□□□□□ -1.33
COL28A1-201ENST00000399429 IBA57-AS1B1ANH7 110 aa6.74□□□□□ -1.33
COL28A1-201ENST00000399429 MIFP14174 115 aa6.74□□□□□ -1.33
COL28A1-201ENST00000399429 PKD1L2Q7Z442 2459 aa6.74□□□□□ -1.33
COL28A1-201ENST00000399429 PRR3P79522 188 aaKnown RBP6.73□□□□□ -1.33
COL28A1-201ENST00000399429 C10orf99Q6UWK7 81 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 MSMBP08118 114 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 Q6ZSN1 163 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 SPTSSBQ8NFR3 76 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 MUC4Q99102 2169 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 REV3LO60673 3130 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 TRBV7-6A0A0J9YX20 115 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 NDUFC1O43677 76 aa6.73□□□□□ -1.33
COL28A1-201ENST00000399429 PRR4Q16378 134 aa6.72□□□□□ -1.33
COL28A1-201ENST00000399429 LINC01561Q8N1V8 128 aa6.72□□□□□ -1.33
COL28A1-201ENST00000399429 Q8N3U1 123 aa6.72□□□□□ -1.33
COL28A1-201ENST00000399429 ANKRD11Q6UB99 2663 aaPredicted RBP6.72□□□□□ -1.33
COL28A1-201ENST00000399429 ABCA12Q86UK0 2595 aa6.72□□□□□ -1.33
COL28A1-201ENST00000399429 TRBV10-1A0A0K0K1A3 114 aa6.72□□□□□ -1.33
COL28A1-201ENST00000399429 IGHV4-61A0A0C4DH41 118 aa6.71□□□□□ -1.33
COL28A1-201ENST00000399429 Q6ZQY7 126 aa6.71□□□□□ -1.34
COL28A1-201ENST00000399429 DEFB112Q30KQ8 113 aa6.71□□□□□ -1.34
COL28A1-201ENST00000399429 CDC42SE2Q9NRR3 84 aa6.71□□□□□ -1.34
COL28A1-201ENST00000399429 MRPL55Q7Z7F7 128 aaKnown RBP6.7□□□□□ -1.34
COL28A1-201ENST00000399429 PDE6GP18545 87 aa6.7□□□□□ -1.34
COL28A1-201ENST00000399429 HIGD2BQ4VC39 106 aa6.7□□□□□ -1.34
COL28A1-201ENST00000399429 NTM-AS1Q6ZSK4 140 aa6.7□□□□□ -1.34
COL28A1-201ENST00000399429 LINC00269Q8N2A0 174 aa6.7□□□□□ -1.34
COL28A1-201ENST00000399429 C2orf48Q96LS8 159 aa6.7□□□□□ -1.34
COL28A1-201ENST00000399429 BPY2O14599 106 aa6.69□□□□□ -1.34
COL28A1-201ENST00000399429 LMO4P61968 165 aa6.69□□□□□ -1.34
COL28A1-201ENST00000399429 Q8N814 137 aa6.69□□□□□ -1.34
COL28A1-201ENST00000399429 MGAQ8IWI9 3026 aa6.69□□□□□ -1.34
COL28A1-201ENST00000399429 ATP5EP56381 51 aaPredicted RBP6.69□□□□□ -1.34
COL28A1-201ENST00000399429 GYPEP15421 78 aa6.69□□□□□ -1.34
COL28A1-201ENST00000399429 ESM1Q9NQ30 184 aa6.69□□□□□ -1.34
COL28A1-201ENST00000399429 LOC100131303A0A0U1RQF7 123 aa6.68□□□□□ -1.34
COL28A1-201ENST00000399429 TRBV6-4A0A1B0GX49 114 aa6.68□□□□□ -1.34
COL28A1-201ENST00000399429 CYSTM1Q9H1C7 97 aa6.68□□□□□ -1.34
COL28A1-201ENST00000399429 WIPF1O43516 503 aa6.68□□□□□ -1.34
COL28A1-201ENST00000399429 ZNF561-AS1K7EIQ3 104 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 DSCR9P59020 149 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 FAM19A3Q7Z5A8 133 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 Q8NA96 180 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 RETNQ9HD89 108 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 COL6A3P12111 3177 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 DIRC1Q969H9 104 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 MAP6D1Q9H9H5 199 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 A6NDX4 124 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.67□□□□□ -1.34
COL28A1-201ENST00000399429 LINC00474Q9P2X8 69 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 IGLV5-39A0A0G2JS06 123 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 C3orf84H3BNL1 204 aa6.67□□□□□ -1.34
COL28A1-201ENST00000399429 KALRNO60229 2985 aa6.66□□□□□ -1.34
COL28A1-201ENST00000399429 A8MTW9 85 aa6.66□□□□□ -1.34
COL28A1-201ENST00000399429 PSPHP1O15172 72 aa6.66□□□□□ -1.34
COL28A1-201ENST00000399429 LINC01547P58512 204 aaPredicted RBP6.66□□□□□ -1.34
COL28A1-201ENST00000399429 CELA1Q9UNI1 258 aa6.66□□□□□ -1.34
COL28A1-201ENST00000399429 MAP1AP78559 2803 aaPredicted RBP6.66□□□□□ -1.34
COL28A1-201ENST00000399429 K7ENP7 123 aa6.66□□□□□ -1.34
COL28A1-201ENST00000399429 C9orf129Q5T035 196 aaKnown RBP6.66□□□□□ -1.34
COL28A1-201ENST00000399429 TMEM254Q8TBM7 123 aa6.66□□□□□ -1.34
COL28A1-201ENST00000399429 Q6ZVQ6 151 aa6.65□□□□□ -1.34
COL28A1-201ENST00000399429 ZNF843Q8N446 348 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms