RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 IGHV4-28A0A0C4DH34 117 aa8.83□□□□□ -1
CIITA-202ENST00000381835 EIF4EBP3O60516 100 aaPredicted RBP8.83□□□□□ -1
CIITA-202ENST00000381835 IGHV3-53P01767 116 aa8.83□□□□□ -1
CIITA-202ENST00000381835 SPANXA1Q9NS26 97 aa8.83□□□□□ -1
CIITA-202ENST00000381835 IGLV4-3A0A075B6K6 122 aa8.82□□□□□ -1
CIITA-202ENST00000381835 Q1RN00 199 aa8.82□□□□□ -1
CIITA-202ENST00000381835 SMIM20Q8N5G0 67 aa8.82□□□□□ -1
CIITA-202ENST00000381835 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.82□□□□□ -1
CIITA-202ENST00000381835 TMEM262E9PQX1 116 aa8.82□□□□□ -1
CIITA-202ENST00000381835 RS1O15537 224 aa8.82□□□□□ -1
CIITA-202ENST00000381835 DEFB130BP0DP73 79 aa8.82□□□□□ -1
CIITA-202ENST00000381835 DEFB130AP0DP74 79 aa8.82□□□□□ -1
CIITA-202ENST00000381835 MIFP14174 115 aa8.82□□□□□ -1
CIITA-202ENST00000381835 Q8NAQ8 132 aa8.82□□□□□ -1
CIITA-202ENST00000381835 KRTAP21-3Q3LHN1 58 aa8.81□□□□□ -1
CIITA-202ENST00000381835 MRAPQ8TCY5 172 aa8.81□□□□□ -1
CIITA-202ENST00000381835 FAM222AQ5U5X8 452 aa8.81□□□□□ -1
CIITA-202ENST00000381835 Q6ZSN1 163 aa8.81□□□□□ -1
CIITA-202ENST00000381835 TENM3Q9P273 2699 aa8.8□□□□□ -1
CIITA-202ENST00000381835 A0A0J9YXY3 114 aa8.8□□□□□ -1
CIITA-202ENST00000381835 ANAPC13Q9BS18 74 aa8.8□□□□□ -1
CIITA-202ENST00000381835 TRAV4A0A0B4J268 109 aa8.8□□□□□ -1
CIITA-202ENST00000381835 IGHV3-30-3P0DP02 117 aa8.8□□□□□ -1
CIITA-202ENST00000381835 ATXN8Q156A1 80 aa8.8□□□□□ -1
CIITA-202ENST00000381835 TIMM21Q9BVV7 248 aa8.8□□□□□ -1
CIITA-202ENST00000381835 M0QXV9 152 aa8.79□□□□□ -1
CIITA-202ENST00000381835 C5orf47Q569G3 176 aa8.79□□□□□ -1
CIITA-202ENST00000381835 B5MCH6 92 aa8.78□□□□□ -1
CIITA-202ENST00000381835 PRSS2P07478 247 aa8.78□□□□□ -1
CIITA-202ENST00000381835 CELA1Q9UNI1 258 aa8.78□□□□□ -1
CIITA-202ENST00000381835 LYRM9A8MSI8 78 aa8.77□□□□□ -1
CIITA-202ENST00000381835 Q9UF83 564 aa8.77□□□□□ -1
CIITA-202ENST00000381835 PYGO1Q9Y3Y4 419 aa8.77□□□□□ -1
CIITA-202ENST00000381835 TRAV8-3A0A0A6YYJ7 113 aa8.77□□□□□ -1.01
CIITA-202ENST00000381835 LINC01620Q4KN68 170 aa8.77□□□□□ -1.01
CIITA-202ENST00000381835 ZFAND6Q6FIF0 208 aa8.77□□□□□ -1.01
CIITA-202ENST00000381835 CEMP1Q6PRD7 247 aaPredicted RBP8.77□□□□□ -1.01
CIITA-202ENST00000381835 NTN5Q8WTR8 489 aaPredicted RBP8.77□□□□□ -1.01
CIITA-202ENST00000381835 TRGV4A0A0C4DH28 118 aa8.76□□□□□ -1.01
CIITA-202ENST00000381835 MRPS36P82909 103 aaKnown RBP8.76□□□□□ -1.01
CIITA-202ENST00000381835 LINC00612Q8N6U2 182 aa8.76□□□□□ -1.01
CIITA-202ENST00000381835 TRBV30A0A0K0K1B3 111 aa8.76□□□□□ -1.01
CIITA-202ENST00000381835 TRIAP1O43715 76 aa8.76□□□□□ -1.01
CIITA-202ENST00000381835 RNASE13Q5GAN3 156 aaKnown RBP8.76□□□□□ -1.01
CIITA-202ENST00000381835 SPART-AS1P0CW21 52 aa8.75□□□□□ -1.01
CIITA-202ENST00000381835 DAD1P61803 113 aa8.75□□□□□ -1.01
CIITA-202ENST00000381835 LITAFQ99732 161 aa8.75□□□□□ -1.01
CIITA-202ENST00000381835 IGHV1-58A0A0C4DH39 117 aa8.75□□□□□ -1.01
CIITA-202ENST00000381835 FAM104AQ969W3 186 aa8.75□□□□□ -1.01
CIITA-202ENST00000381835 EDA2RQ9HAV5 297 aa8.75□□□□□ -1.01
CIITA-202ENST00000381835 ADAMTSL4-AS1Q5T5F5 129 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 NDUFA12Q9UI09 145 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 TRBV10-2A0A0K0K1G8 114 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 K7EQD1 137 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 SNCGO76070 127 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 FHL2Q14192 279 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 TM2D3Q9BRN9 247 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 SPANXDQ9BXN6 97 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 SPANXCQ9NY87 97 aa8.74□□□□□ -1.01
CIITA-202ENST00000381835 TEX49A0A1B0GTD5 131 aa8.73□□□□□ -1.01
CIITA-202ENST00000381835 NPC2P61916 151 aa8.73□□□□□ -1.01
CIITA-202ENST00000381835 ICOSQ9Y6W8 199 aa8.73□□□□□ -1.01
CIITA-202ENST00000381835 A0A0J9YWU9 116 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 TINCRA0A1B0GVN0 87 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 MIAQ16674 131 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 VSIG2Q96IQ7 327 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 TRAV8-4A0A0B4J246 113 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 COX6CP09669 75 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 UBE2WQ96B02 151 aa8.72□□□□□ -1.01
CIITA-202ENST00000381835 GAGE12JA6NER3 117 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 HTN3P15516 51 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 RPL13AP40429 203 aaKnown RBP8.71□□□□□ -1.01
CIITA-202ENST00000381835 GAGE2BQ13066 116 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 GAGE4Q13068 117 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 GAGE2EQ4V326 116 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 C2orf82Q6UX34 121 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 LINC01600Q96MT4 127 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 GAGE2DQ9UEU5 116 aa8.71□□□□□ -1.01
CIITA-202ENST00000381835 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.71□□□□□ -1.02
CIITA-202ENST00000381835 LOC100131303A0A0U1RQF7 123 aa8.71□□□□□ -1.02
CIITA-202ENST00000381835 TRBV6-4A0A1B0GX49 114 aa8.71□□□□□ -1.02
CIITA-202ENST00000381835 IGKV2-29A2NJV5 120 aaPredicted RBP8.71□□□□□ -1.02
CIITA-202ENST00000381835 DNAJC30Q96LL9 226 aa8.71□□□□□ -1.02
CIITA-202ENST00000381835 CHCHD7Q9BUK0 85 aa8.71□□□□□ -1.02
CIITA-202ENST00000381835 C11orf68Q9H3H3 251 aaKnown RBP8.71□□□□□ -1.02
CIITA-202ENST00000381835 UBE2D4Q9Y2X8 147 aa8.71□□□□□ -1.02
CIITA-202ENST00000381835 HUWE1Q7Z6Z7 4374 aaKnown RBP8.71□□□□□ -1.02
CIITA-202ENST00000381835 IGHV3-38A0A0C4DH36 116 aa8.7□□□□□ -1.02
CIITA-202ENST00000381835 TRBV10-1A0A0K0K1A3 114 aa8.7□□□□□ -1.02
CIITA-202ENST00000381835 ATP5G1P05496 136 aa8.7□□□□□ -1.02
CIITA-202ENST00000381835 RPL36AP83881 106 aaKnown RBP8.7□□□□□ -1.02
CIITA-202ENST00000381835 RPL36ALQ969Q0 106 aaKnown RBP8.7□□□□□ -1.02
CIITA-202ENST00000381835 COL7A1Q02388 2944 aa8.69□□□□□ -1.02
CIITA-202ENST00000381835 F5H768 121 aa8.69□□□□□ -1.02
CIITA-202ENST00000381835 H7C423 109 aa8.69□□□□□ -1.02
CIITA-202ENST00000381835 PRO0255Q9UI72 69 aa8.69□□□□□ -1.02
CIITA-202ENST00000381835 CLEC2BQ92478 149 aa8.68□□□□□ -1.02
CIITA-202ENST00000381835 H3BT86 120 aa8.68□□□□□ -1.02
CIITA-202ENST00000381835 TTC32Q5I0X7 151 aa8.68□□□□□ -1.02
CIITA-202ENST00000381835 PAX4O43316 350 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms