RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 KLK12Q9UKR0 248 aa11.85□□□□□ -0.51
NPHP3-201ENST00000337331 TRANK1O15050 2925 aa11.84□□□□□ -0.51
NPHP3-201ENST00000337331 LINC01546A6NGU7 62 aa11.84□□□□□ -0.51
NPHP3-201ENST00000337331 PRB2P02812 416 aaPredicted RBP11.84□□□□□ -0.51
NPHP3-201ENST00000337331 TSHBP01222 138 aa11.83□□□□□ -0.51
NPHP3-201ENST00000337331 SEC61GP60059 68 aa11.83□□□□□ -0.51
NPHP3-201ENST00000337331 PRO0255Q9UI72 69 aa11.83□□□□□ -0.51
NPHP3-201ENST00000337331 SPAG11BQ08648 103 aa11.83□□□□□ -0.52
NPHP3-201ENST00000337331 NDUFC2-KCTD14E9PQ53 114 aa11.83□□□□□ -0.52
NPHP3-201ENST00000337331 TRBV27A0A0K0K1C4 114 aa11.82□□□□□ -0.52
NPHP3-201ENST00000337331 RNASE3P12724 160 aaKnown RBP11.82□□□□□ -0.52
NPHP3-201ENST00000337331 DEFB114Q30KQ6 69 aa11.82□□□□□ -0.52
NPHP3-201ENST00000337331 DNAJC9-AS1A6NH13 148 aa11.82□□□□□ -0.52
NPHP3-201ENST00000337331 PROK1P58294 105 aa11.82□□□□□ -0.52
NPHP3-201ENST00000337331 TIMM17BO60830 172 aa11.82□□□□□ -0.52
NPHP3-201ENST00000337331 UNC80Q8N2C7 3258 aa11.81□□□□□ -0.52
NPHP3-201ENST00000337331 COX8CQ7Z4L0 72 aa11.81□□□□□ -0.52
NPHP3-201ENST00000337331 CDSNQ15517 529 aa11.81□□□□□ -0.52
NPHP3-201ENST00000337331 SMIM26A0A096LP01 95 aa11.8□□□□□ -0.52
NPHP3-201ENST00000337331 CLPSL1A2RUU4 121 aa11.8□□□□□ -0.52
NPHP3-201ENST00000337331 CDH23Q9H251 3354 aa11.8□□□□□ -0.52
NPHP3-201ENST00000337331 ETDCA0A1B0GVM5 59 aa11.8□□□□□ -0.52
NPHP3-201ENST00000337331 UBE2BP63146 152 aa11.79□□□□□ -0.52
NPHP3-201ENST00000337331 Q6YL49 198 aa11.79□□□□□ -0.52
NPHP3-201ENST00000337331 NDUFA1O15239 70 aa11.79□□□□□ -0.52
NPHP3-201ENST00000337331 PSMG3-AS1Q96PY0 264 aa11.79□□□□□ -0.52
NPHP3-201ENST00000337331 ACANP16112 2415 aa11.79□□□□□ -0.52
NPHP3-201ENST00000337331 Q6JHZ5 121 aa11.79□□□□□ -0.52
NPHP3-201ENST00000337331 JMJD7-PLA2G4BH0Y9G9 81 aa11.78□□□□□ -0.52
NPHP3-201ENST00000337331 IGHV4-28A0A0C4DH34 117 aa11.77□□□□□ -0.52
NPHP3-201ENST00000337331 SERP1Q9Y6X1 66 aa11.77□□□□□ -0.53
NPHP3-201ENST00000337331 FUSP35637 526 aaKnown RBP eCLIP11.77□□□□□ -0.53
NPHP3-201ENST00000337331 FAM19A4Q96LR4 140 aa11.77□□□□□ -0.53
NPHP3-201ENST00000337331 IGHV4-31P0DP07 118 aa11.77□□□□□ -0.53
NPHP3-201ENST00000337331 SOSTDC1Q6X4U4 206 aa11.77□□□□□ -0.53
NPHP3-201ENST00000337331 TRBV6-5A0A0K0K1A5 114 aa11.76□□□□□ -0.53
NPHP3-201ENST00000337331 DNAH14Q0VDD8 3507 aa11.76□□□□□ -0.53
NPHP3-201ENST00000337331 LINC00846Q9NV44 126 aa11.76□□□□□ -0.53
NPHP3-201ENST00000337331 HILS1P60008 231 aa11.76□□□□□ -0.53
NPHP3-201ENST00000337331 PRORYQ9H606 182 aa11.76□□□□□ -0.53
NPHP3-201ENST00000337331 PRM2P04554 102 aa11.75□□□□□ -0.53
NPHP3-201ENST00000337331 SMCR5Q8TEV8 140 aa11.75□□□□□ -0.53
NPHP3-201ENST00000337331 KLLNB2CW77 178 aa11.75□□□□□ -0.53
NPHP3-201ENST00000337331 CCL18P55774 89 aa11.74□□□□□ -0.53
NPHP3-201ENST00000337331 MRGPRG-AS1Q2M3A8 158 aa11.74□□□□□ -0.53
NPHP3-201ENST00000337331 LINC00269Q8N2A0 174 aa11.74□□□□□ -0.53
NPHP3-201ENST00000337331 FAM222AQ5U5X8 452 aa11.73□□□□□ -0.53
NPHP3-201ENST00000337331 NREPQ16612 68 aa11.72□□□□□ -0.53
NPHP3-201ENST00000337331 SCXQ7RTU7 201 aa11.72□□□□□ -0.53
NPHP3-201ENST00000337331 DIRC1Q969H9 104 aa11.72□□□□□ -0.53
NPHP3-201ENST00000337331 FAM19A1Q7Z5A9 133 aa11.72□□□□□ -0.53
NPHP3-201ENST00000337331 FREM2Q5SZK8 3169 aa11.72□□□□□ -0.53
NPHP3-201ENST00000337331 TMEM256-PLSCR3K7ERE1 68 aa11.71□□□□□ -0.53
NPHP3-201ENST00000337331 MRPS36P82909 103 aaKnown RBP11.7□□□□□ -0.54
NPHP3-201ENST00000337331 DCANP1Q8TF63 244 aa11.7□□□□□ -0.54
NPHP3-201ENST00000337331 EPG5Q9HCE0 2579 aa11.7□□□□□ -0.54
NPHP3-201ENST00000337331 LINC00336Q6ZUF6 198 aa11.69□□□□□ -0.54
NPHP3-201ENST00000337331 F8W735 103 aaPredicted RBP11.69□□□□□ -0.54
NPHP3-201ENST00000337331 REG3AQ06141 175 aa11.69□□□□□ -0.54
NPHP3-201ENST00000337331 IGLV1-40P01703 118 aa11.68□□□□□ -0.54
NPHP3-201ENST00000337331 HIGD2BQ4VC39 106 aa11.68□□□□□ -0.54
NPHP3-201ENST00000337331 ATP5EP2Q5VTU8 51 aa11.68□□□□□ -0.54
NPHP3-201ENST00000337331 COL4A2P08572 1712 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 AVPP01185 164 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 Q8N2B8 174 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 NBEAQ8NFP9 2946 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 C18orf65Q6ZTR6 163 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 SMIM11BQ8TCY0 68 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 C9orf85Q96MD7 179 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 TRBV6-8A0A0A6YYG3 113 aa11.67□□□□□ -0.54
NPHP3-201ENST00000337331 CHCHD10Q8WYQ3 142 aaPredicted RBP11.67□□□□□ -0.54
NPHP3-201ENST00000337331 ZNF702PQ9H963 129 aa11.66□□□□□ -0.54
NPHP3-201ENST00000337331 WIPF1O43516 503 aa11.66□□□□□ -0.54
NPHP3-201ENST00000337331 IBA57-AS1B1ANH7 110 aa11.65□□□□□ -0.54
NPHP3-201ENST00000337331 MRPL55Q7Z7F7 128 aaKnown RBP11.65□□□□□ -0.54
NPHP3-201ENST00000337331 RETNQ9HD89 108 aa11.65□□□□□ -0.54
NPHP3-201ENST00000337331 EDN2P20800 178 aa11.65□□□□□ -0.54
NPHP3-201ENST00000337331 A0A087WYN8 130 aa11.65□□□□□ -0.55
NPHP3-201ENST00000337331 TRBV6-4A0A1B0GX49 114 aa11.65□□□□□ -0.55
NPHP3-201ENST00000337331 A0A1W2PPR1 153 aa11.65□□□□□ -0.55
NPHP3-201ENST00000337331 LINC00482Q8N8I6 264 aa11.65□□□□□ -0.55
NPHP3-201ENST00000337331 LRCOL1A6NCL2 159 aa11.64□□□□□ -0.55
NPHP3-201ENST00000337331 FHL2Q14192 279 aa11.64□□□□□ -0.55
NPHP3-201ENST00000337331 WFDC10AQ9H1F0 79 aa11.64□□□□□ -0.55
NPHP3-201ENST00000337331 VPS13AQ96RL7 3174 aa11.63□□□□□ -0.55
NPHP3-201ENST00000337331 AMELXQ99217 191 aa11.63□□□□□ -0.55
NPHP3-201ENST00000337331 COX7BP24311 80 aa11.63□□□□□ -0.55
NPHP3-201ENST00000337331 TRIOO75962 3097 aa11.63□□□□□ -0.55
NPHP3-201ENST00000337331 XAGE1AQ9HD64 81 aa11.63□□□□□ -0.55
NPHP3-201ENST00000337331 UBE2D4Q9Y2X8 147 aa11.62□□□□□ -0.55
NPHP3-201ENST00000337331 TRAV7A0A075B6U4 112 aa11.62□□□□□ -0.55
NPHP3-201ENST00000337331 H3BQ85 93 aa11.62□□□□□ -0.55
NPHP3-201ENST00000337331 SZT2Q5T011 3432 aa11.61□□□□□ -0.55
NPHP3-201ENST00000337331 EIF4EBP3O60516 100 aaPredicted RBP11.61□□□□□ -0.55
NPHP3-201ENST00000337331 SPTSSBQ8NFR3 76 aa11.61□□□□□ -0.55
NPHP3-201ENST00000337331 PCSK5Q92824 1860 aa11.61□□□□□ -0.55
NPHP3-201ENST00000337331 NDUFS5O43920 106 aa11.61□□□□□ -0.55
NPHP3-201ENST00000337331 LOC100131303A0A0U1RQF7 123 aa11.6□□□□□ -0.55
NPHP3-201ENST00000337331 LYRM9A8MSI8 78 aa11.6□□□□□ -0.55
NPHP3-201ENST00000337331 PDE6GP18545 87 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms