RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 FAM236AA0A1B0GUQ0 79 aa13.47□□□□□ -0.25
RTN4-201ENST00000317610 FAM236BA0A1B0GV22 79 aa13.47□□□□□ -0.25
RTN4-201ENST00000317610 TRBV6-4A0A1B0GX49 114 aa13.46□□□□□ -0.25
RTN4-201ENST00000317610 OVOL2Q9BRP0 275 aa13.46□□□□□ -0.25
RTN4-201ENST00000317610 MALP21145 153 aa13.46□□□□□ -0.26
RTN4-201ENST00000317610 C16orf74Q96GX8 76 aa13.46□□□□□ -0.26
RTN4-201ENST00000317610 SND1-IT1Q9HBX3 110 aa13.46□□□□□ -0.26
RTN4-201ENST00000317610 CCL24O00175 119 aa13.45□□□□□ -0.26
RTN4-201ENST00000317610 AKAP9Q99996 3911 aa13.44□□□□□ -0.26
RTN4-201ENST00000317610 LOC100131303A0A0U1RQF7 123 aa13.44□□□□□ -0.26
RTN4-201ENST00000317610 CXCL5P42830 114 aa13.44□□□□□ -0.26
RTN4-201ENST00000317610 Q9HAA7 133 aa13.44□□□□□ -0.26
RTN4-201ENST00000317610 IGSF10Q6WRI0 2623 aa13.43□□□□□ -0.26
RTN4-201ENST00000317610 DEFB113Q30KQ7 82 aa13.43□□□□□ -0.26
RTN4-201ENST00000317610 LRRC75A-AS1Q8N1F1 130 aa13.43□□□□□ -0.26
RTN4-201ENST00000317610 POLQO75417 2590 aa13.43□□□□□ -0.26
RTN4-201ENST00000317610 IGHV3OR16-9A0A0B4J2B5 98 aa13.42□□□□□ -0.26
RTN4-201ENST00000317610 CMC4P56277 68 aaPredicted RBP13.42□□□□□ -0.26
RTN4-201ENST00000317610 KRTAP10-9P60411 292 aa13.42□□□□□ -0.26
RTN4-201ENST00000317610 C5orf38Q86SI9 138 aa13.42□□□□□ -0.26
RTN4-201ENST00000317610 TRGV2A0A075B6R0 118 aa13.42□□□□□ -0.26
RTN4-201ENST00000317610 SMIM11BQ8TCY0 68 aa13.42□□□□□ -0.26
RTN4-201ENST00000317610 MYO9AB2RTY4 2548 aa13.42□□□□□ -0.26
RTN4-201ENST00000317610 IBA57-AS1B1ANH7 110 aa13.41□□□□□ -0.26
RTN4-201ENST00000317610 ATP5G1P05496 136 aa13.41□□□□□ -0.26
RTN4-201ENST00000317610 CCL18P55774 89 aa13.41□□□□□ -0.26
RTN4-201ENST00000317610 TOMM7Q9P0U1 55 aa13.41□□□□□ -0.26
RTN4-201ENST00000317610 IGLV4-60A0A075B6I1 120 aa13.4□□□□□ -0.26
RTN4-201ENST00000317610 A0A1W2PRX2 142 aa13.4□□□□□ -0.26
RTN4-201ENST00000317610 H0YGX0 51 aa13.4□□□□□ -0.26
RTN4-201ENST00000317610 LINC00158P58513 81 aa13.4□□□□□ -0.26
RTN4-201ENST00000317610 A0A087WYN8 130 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 A0A087WZ39 114 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 TRBV6-8A0A0A6YYG3 113 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 TMEM126AQ9H061 195 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 GAGE2AQ6NT46 116 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 OBSCN-AS1Q96MR7 158 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 FAM110AQ9BQ89 295 aa13.39□□□□□ -0.27
RTN4-201ENST00000317610 TEX15Q9BXT5 2789 aa13.38□□□□□ -0.27
RTN4-201ENST00000317610 C11orf44Q8N8P7 122 aa13.38□□□□□ -0.27
RTN4-201ENST00000317610 TRGV4A0A0C4DH28 118 aa13.38□□□□□ -0.27
RTN4-201ENST00000317610 DNAJC9-AS1A6NH13 148 aa13.38□□□□□ -0.27
RTN4-201ENST00000317610 CSNK1G2-AS1Q8NCQ2 148 aa13.38□□□□□ -0.27
RTN4-201ENST00000317610 CHD6Q8TD26 2715 aa13.37□□□□□ -0.27
RTN4-201ENST00000317610 DNAL4O96015 105 aa13.37□□□□□ -0.27
RTN4-201ENST00000317610 MYO18BQ8IUG5 2567 aa13.37□□□□□ -0.27
RTN4-201ENST00000317610 ACACBO00763 2458 aa13.37□□□□□ -0.27
RTN4-201ENST00000317610 FHL2Q14192 279 aa13.36□□□□□ -0.27
RTN4-201ENST00000317610 KRTAP1-3Q8IUG1 177 aa13.36□□□□□ -0.27
RTN4-201ENST00000317610 C19orf73Q9NVV2 129 aa13.36□□□□□ -0.27
RTN4-201ENST00000317610 IGKV3OR2-268A0A0C4DH90 116 aa13.36□□□□□ -0.27
RTN4-201ENST00000317610 SMIM20Q8N5G0 67 aa13.35□□□□□ -0.27
RTN4-201ENST00000317610 C3orf22Q8N5N4 141 aa13.35□□□□□ -0.27
RTN4-201ENST00000317610 WFDC10AQ9H1F0 79 aa13.34□□□□□ -0.27
RTN4-201ENST00000317610 C9orf129Q5T035 196 aaKnown RBP13.34□□□□□ -0.27
RTN4-201ENST00000317610 WNK1Q9H4A3 2382 aa13.34□□□□□ -0.27
RTN4-201ENST00000317610 UQCRQO14949 82 aa13.33□□□□□ -0.28
RTN4-201ENST00000317610 LY6G6DO95868 133 aa13.33□□□□□ -0.28
RTN4-201ENST00000317610 RPL35AP18077 110 aaKnown RBP13.33□□□□□ -0.28
RTN4-201ENST00000317610 HIST1H4AP62805 103 aaKnown RBP13.33□□□□□ -0.28
RTN4-201ENST00000317610 CACNA1AO00555 2505 aa13.33□□□□□ -0.28
RTN4-201ENST00000317610 NOTCH3Q9UM47 2321 aa13.32□□□□□ -0.28
RTN4-201ENST00000317610 C2CD3Q4AC94 2353 aa13.32□□□□□ -0.28
RTN4-201ENST00000317610 LINC00959A0A1B0GUT2 108 aa13.31□□□□□ -0.28
RTN4-201ENST00000317610 ESM1Q9NQ30 184 aa13.31□□□□□ -0.28
RTN4-201ENST00000317610 KLK5Q9Y337 293 aaPredicted RBP13.31□□□□□ -0.28
RTN4-201ENST00000317610 PTPN13Q12923 2485 aa13.31□□□□□ -0.28
RTN4-201ENST00000317610 IGLV1-51P01701 117 aa13.31□□□□□ -0.28
RTN4-201ENST00000317610 PFN2P35080 140 aa13.31□□□□□ -0.28
RTN4-201ENST00000317610 LINC00526Q96FQ7 95 aa13.31□□□□□ -0.28
RTN4-201ENST00000317610 PLA2G2AP14555 144 aa13.3□□□□□ -0.28
RTN4-201ENST00000317610 C14orf132Q9NPU4 83 aa13.3□□□□□ -0.28
RTN4-201ENST00000317610 LECT2O14960 151 aa13.3□□□□□ -0.28
RTN4-201ENST00000317610 NAV2Q8IVL1 2488 aa13.3□□□□□ -0.28
RTN4-201ENST00000317610 FAM208BQ5VWN6 2430 aa13.29□□□□□ -0.28
RTN4-201ENST00000317610 PAX4O43316 350 aa13.29□□□□□ -0.28
RTN4-201ENST00000317610 C9orf153Q5TBE3 101 aa13.29□□□□□ -0.28
RTN4-201ENST00000317610 C3orf56Q8N813 242 aa13.29□□□□□ -0.28
RTN4-201ENST00000317610 PRB1P04280 392 aa13.28□□□□□ -0.28
RTN4-201ENST00000317610 Q6JHZ5 121 aa13.27□□□□□ -0.28
RTN4-201ENST00000317610 C2orf48Q96LS8 159 aa13.27□□□□□ -0.29
RTN4-201ENST00000317610 COX7CP15954 63 aa13.26□□□□□ -0.29
RTN4-201ENST00000317610 C6orf226Q5I0X4 101 aa13.26□□□□□ -0.29
RTN4-201ENST00000317610 EPG5Q9HCE0 2579 aa13.26□□□□□ -0.29
RTN4-201ENST00000317610 Q8IZM0 81 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 OR13C6PQ8NH95 151 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 SETXQ7Z333 2677 aaKnown RBP13.25□□□□□ -0.29
RTN4-201ENST00000317610 ATOX1O00244 68 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 LINC01561Q8N1V8 128 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 LINC00612Q8N6U2 182 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 LINC00167Q96N53 147 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 LINC00846Q9NV44 126 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 CENPEQ02224 2701 aa13.25□□□□□ -0.29
RTN4-201ENST00000317610 A0A1B0GUV1 79 aa13.24□□□□□ -0.29
RTN4-201ENST00000317610 LINC01006Q8NI28 216 aa13.24□□□□□ -0.29
RTN4-201ENST00000317610 C16orf95Q9H693 158 aa13.24□□□□□ -0.29
RTN4-201ENST00000317610 KIR2DL5BQ8NHK3 375 aa13.24□□□□□ -0.29
RTN4-201ENST00000317610 LRRK2Q5S007 2527 aa13.23□□□□□ -0.29
RTN4-201ENST00000317610 ORMDL1Q9P0S3 153 aa13.23□□□□□ -0.29
RTN4-201ENST00000317610 NCR3O14931 201 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms