RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 LINC00526Q96FQ7 95 aa10.35□□□□□ -0.75
CCDC88A-201ENST00000263630 NUPR2A6NF83 97 aa10.35□□□□□ -0.75
CCDC88A-201ENST00000263630 DEFB1P60022 68 aa10.35□□□□□ -0.75
CCDC88A-201ENST00000263630 KRTAP27-1Q3LI81 207 aa10.35□□□□□ -0.75
CCDC88A-201ENST00000263630 CPAMD8Q8IZJ3 1885 aa10.35□□□□□ -0.75
CCDC88A-201ENST00000263630 COL5A1P20908 1838 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 A0A1B0GU69 56 aa10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 K7EQG2 157 aa10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 GRNP28799 593 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 IGLV1-47P01700 117 aa10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 SPINT4Q6UDR6 99 aa10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 TNFRSF13BO14836 293 aaPredicted RBP10.34□□□□□ -0.75
CCDC88A-201ENST00000263630 RBX1P62877 108 aa10.33□□□□□ -0.76
CCDC88A-201ENST00000263630 ODF3BA8MYP8 253 aa10.33□□□□□ -0.76
CCDC88A-201ENST00000263630 Q8N814 137 aa10.33□□□□□ -0.76
CCDC88A-201ENST00000263630 C7orf65Q6ZTY9 151 aa10.33□□□□□ -0.76
CCDC88A-201ENST00000263630 IGLV2-18A0A075B6J9 118 aa10.32□□□□□ -0.76
CCDC88A-201ENST00000263630 LY6G6CO95867 125 aa10.32□□□□□ -0.76
CCDC88A-201ENST00000263630 COL4A5P29400 1685 aa10.32□□□□□ -0.76
CCDC88A-201ENST00000263630 P0C879 139 aa10.32□□□□□ -0.76
CCDC88A-201ENST00000263630 SPRNQ5BIV9 151 aa10.32□□□□□ -0.76
CCDC88A-201ENST00000263630 ZNF80P51504 273 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-201ENST00000263630 PLA2G2CQ5R387 149 aa10.31□□□□□ -0.76
CCDC88A-201ENST00000263630 Q8N7P7 452 aa10.31□□□□□ -0.76
CCDC88A-201ENST00000263630 MAPKAPK5-AS1Q8N8E1 139 aa10.31□□□□□ -0.76
CCDC88A-201ENST00000263630 LINC00959A0A1B0GUT2 108 aa10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 PCOTHQ58A44 107 aa10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 ANKHD1Q8IWZ3 2542 aaKnown RBP10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 IGF2-ASQ6U949 168 aa10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 M0R2N4 97 aa10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 ZNF702PQ9H963 129 aa10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 PRLHP81277 87 aa10.3□□□□□ -0.76
CCDC88A-201ENST00000263630 F8WDY8 70 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 PRO0628Q9UI54 55 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 E7EUB6 86 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 TRBV10-3A0A0K0K1G6 114 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 HCG22E2RYF7 251 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 ACYP2P14621 99 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 IGFL2Q6UWQ7 119 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 Q6YL49 198 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 PIP4P1Q86T03 277 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 Q8N3U1 123 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 XGP55808 180 aa10.29□□□□□ -0.76
CCDC88A-201ENST00000263630 C8orf87E5RJ46 101 aa10.28□□□□□ -0.76
CCDC88A-201ENST00000263630 EIF4EBP1Q13541 118 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-201ENST00000263630 BBC3Q96PG8 261 aaPredicted RBP10.28□□□□□ -0.76
CCDC88A-201ENST00000263630 MRGPRG-AS1Q2M3A8 158 aa10.27□□□□□ -0.76
CCDC88A-201ENST00000263630 U3KQA8 63 aa10.27□□□□□ -0.77
CCDC88A-201ENST00000263630 RETNLBQ9BQ08 111 aa10.27□□□□□ -0.77
CCDC88A-201ENST00000263630 TSHBP01222 138 aa10.27□□□□□ -0.77
CCDC88A-201ENST00000263630 CLUHP3Q96NS8 147 aa10.26□□□□□ -0.77
CCDC88A-201ENST00000263630 IGLV5-52A0A0A0MRZ9 124 aa10.26□□□□□ -0.77
CCDC88A-201ENST00000263630 LINC00575Q6W349 94 aa10.26□□□□□ -0.77
CCDC88A-201ENST00000263630 IGLV2-14P01704 120 aa10.26□□□□□ -0.77
CCDC88A-201ENST00000263630 Q9BRP9 147 aa10.26□□□□□ -0.77
CCDC88A-201ENST00000263630 LINC00337Q8N6G1 96 aa10.25□□□□□ -0.77
CCDC88A-201ENST00000263630 TP53AIP1Q9HCN2 124 aa10.25□□□□□ -0.77
CCDC88A-201ENST00000263630 EGFEM1PQ0D2K5 195 aa10.25□□□□□ -0.77
CCDC88A-201ENST00000263630 ADORA2A-AS1P86434 159 aa10.25□□□□□ -0.77
CCDC88A-201ENST00000263630 THSD7BQ9C0I4 1608 aa10.25□□□□□ -0.77
CCDC88A-201ENST00000263630 SBSPONQ8IVN8 264 aa10.25□□□□□ -0.77
CCDC88A-201ENST00000263630 RNASE3P12724 160 aaKnown RBP10.24□□□□□ -0.77
CCDC88A-201ENST00000263630 GDF5OSQ5U4N7 250 aa10.24□□□□□ -0.77
CCDC88A-201ENST00000263630 CYSRT1A8MQ03 144 aa10.24□□□□□ -0.77
CCDC88A-201ENST00000263630 MUC6Q6W4X9 2439 aa10.24□□□□□ -0.77
CCDC88A-201ENST00000263630 PRORYQ9H606 182 aa10.23□□□□□ -0.77
CCDC88A-201ENST00000263630 NRGNQ92686 78 aa10.23□□□□□ -0.77
CCDC88A-201ENST00000263630 FRMD6-AS1P0C7T7 363 aa10.23□□□□□ -0.77
CCDC88A-201ENST00000263630 CACNA1AO00555 2505 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 ACACBO00763 2458 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 C2CD3Q4AC94 2353 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 Q8N6K4 173 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 C1orf64Q8NEQ6 169 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 TTC28Q96AY4 2481 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 CUL9Q8IWT3 2517 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 IGLV2-8P01709 118 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 FBXL19-AS1Q494R0 122 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 CHCHD7Q9BUK0 85 aa10.22□□□□□ -0.77
CCDC88A-201ENST00000263630 Q6ZTC4 211 aa10.21□□□□□ -0.77
CCDC88A-201ENST00000263630 COL4A1P02462 1669 aa10.21□□□□□ -0.77
CCDC88A-201ENST00000263630 MSMPQ1L6U9 139 aa10.21□□□□□ -0.78
CCDC88A-201ENST00000263630 C2orf91Q6ZV80 131 aa10.21□□□□□ -0.78
CCDC88A-201ENST00000263630 MBD6Q96DN6 1003 aa10.2□□□□□ -0.78
CCDC88A-201ENST00000263630 C2orf48Q96LS8 159 aa10.2□□□□□ -0.78
CCDC88A-201ENST00000263630 PLA2G2EQ9NZK7 142 aa10.2□□□□□ -0.78
CCDC88A-201ENST00000263630 IGKV2D-30A0A075B6S6 120 aa10.19□□□□□ -0.78
CCDC88A-201ENST00000263630 IGKV2-30P06310 120 aa10.19□□□□□ -0.78
CCDC88A-201ENST00000263630 CDC42SE2Q9NRR3 84 aa10.19□□□□□ -0.78
CCDC88A-201ENST00000263630 LINC00574Q9H8X3 128 aa10.18□□□□□ -0.78
CCDC88A-201ENST00000263630 PROK1P58294 105 aa10.18□□□□□ -0.78
CCDC88A-201ENST00000263630 LINC01556Q5JQF7 62 aa10.18□□□□□ -0.78
CCDC88A-201ENST00000263630 LINC00482Q8N8I6 264 aa10.18□□□□□ -0.78
CCDC88A-201ENST00000263630 MYO9AB2RTY4 2548 aa10.18□□□□□ -0.78
CCDC88A-201ENST00000263630 FSTL3O95633 263 aa10.17□□□□□ -0.78
CCDC88A-201ENST00000263630 HIVEP3Q5T1R4 2406 aa10.16□□□□□ -0.78
CCDC88A-201ENST00000263630 LRRK2Q5S007 2527 aa10.16□□□□□ -0.78
CCDC88A-201ENST00000263630 COL4A6Q14031 1691 aa10.16□□□□□ -0.78
CCDC88A-201ENST00000263630 ATP11AUNQ6ZP68 121 aa10.15□□□□□ -0.78
CCDC88A-201ENST00000263630 A0A087WSZ3 146 aa10.15□□□□□ -0.78
CCDC88A-201ENST00000263630 CRIP1P50238 77 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms