RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 LY6G6DO95868 133 aa7.23□□□□□ -1.25
LIG3-201ENST00000262327 C11orf72Q8NBR9 251 aa7.23□□□□□ -1.25
LIG3-201ENST00000262327 Q9H8V8 135 aa7.23□□□□□ -1.25
LIG3-201ENST00000262327 TRBV30A0A0K0K1B3 111 aa7.22□□□□□ -1.25
LIG3-201ENST00000262327 DNAJC9-AS1A6NH13 148 aa7.22□□□□□ -1.25
LIG3-201ENST00000262327 C4orf26Q17RF5 130 aa7.22□□□□□ -1.25
LIG3-201ENST00000262327 FASNP49327 2511 aaKnown RBP7.22□□□□□ -1.25
LIG3-201ENST00000262327 TRBV10-2A0A0K0K1G8 114 aa7.22□□□□□ -1.25
LIG3-201ENST00000262327 KIR2DL5BQ8NHK3 375 aa7.22□□□□□ -1.25
LIG3-201ENST00000262327 IGKV3OR2-268A0A0C4DH90 116 aa7.21□□□□□ -1.25
LIG3-201ENST00000262327 UQCRQO14949 82 aa7.21□□□□□ -1.25
LIG3-201ENST00000262327 UBE2WQ96B02 151 aa7.21□□□□□ -1.25
LIG3-201ENST00000262327 TRBV7-7A0A0K0K1E9 115 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 HRCT1Q6UXD1 115 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 RNF152Q8N8N0 203 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 LINC00526Q96FQ7 95 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 FLNAP21333 2647 aaKnown RBP7.21□□□□□ -1.26
LIG3-201ENST00000262327 RNASE1P07998 156 aaKnown RBP7.21□□□□□ -1.26
LIG3-201ENST00000262327 RPS28P62857 69 aaKnown RBP7.21□□□□□ -1.26
LIG3-201ENST00000262327 DEFB114Q30KQ6 69 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 Q6ZTI0 123 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 SPANXDQ9BXN6 97 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 SPANXCQ9NY87 97 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 ITPR2Q14571 2701 aa7.21□□□□□ -1.26
LIG3-201ENST00000262327 HECTD1Q9ULT8 2610 aa7.2□□□□□ -1.26
LIG3-201ENST00000262327 INSP01308 110 aa7.2□□□□□ -1.26
LIG3-201ENST00000262327 SMR3AQ99954 134 aa7.2□□□□□ -1.26
LIG3-201ENST00000262327 NBEAL2Q6ZNJ1 2754 aa7.2□□□□□ -1.26
LIG3-201ENST00000262327 COX6CP09669 75 aa7.2□□□□□ -1.26
LIG3-201ENST00000262327 GAGE2AQ6NT46 116 aa7.2□□□□□ -1.26
LIG3-201ENST00000262327 HILS1P60008 231 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 ODF3L2Q3SX64 289 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 LINC00242Q5T6M2 205 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 WFDC10AQ9H1F0 79 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 ESM1Q9NQ30 184 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 PEMTQ9UBM1 199 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 SOSTDC1Q6X4U4 206 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 NTM-AS1Q6ZSK4 140 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 STHQ8IWL8 128 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 C1orf158Q8N1D5 194 aa7.19□□□□□ -1.26
LIG3-201ENST00000262327 LOC100131303A0A0U1RQF7 123 aa7.18□□□□□ -1.26
LIG3-201ENST00000262327 RS1O15537 224 aa7.18□□□□□ -1.26
LIG3-201ENST00000262327 C16orf95Q9H693 158 aa7.18□□□□□ -1.26
LIG3-201ENST00000262327 PIK3CD-AS1Q5SR53 167 aa7.18□□□□□ -1.26
LIG3-201ENST00000262327 PRIMA1Q86XR5 153 aa7.18□□□□□ -1.26
LIG3-201ENST00000262327 LINC00308Q8TCZ7 52 aa7.18□□□□□ -1.26
LIG3-201ENST00000262327 NOP10Q9NPE3 64 aaKnown RBP7.18□□□□□ -1.26
LIG3-201ENST00000262327 MRAPQ8TCY5 172 aa7.17□□□□□ -1.26
LIG3-201ENST00000262327 LST1O00453 97 aa7.17□□□□□ -1.26
LIG3-201ENST00000262327 NDUFA1O15239 70 aa7.17□□□□□ -1.26
LIG3-201ENST00000262327 OXTP01178 125 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 BEAN1Q3B7T3 259 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 C4orf3Q8WVX3 66 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 A8MTW9 85 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 SMIM1B2RUZ4 78 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 F8WDY8 70 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 CIRBPQ14011 172 aaKnown RBP7.16□□□□□ -1.26
LIG3-201ENST00000262327 TOMM7Q9P0U1 55 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 hADV29S1A0JD25 119 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 RPL35AP18077 110 aaKnown RBP7.16□□□□□ -1.26
LIG3-201ENST00000262327 DPH3Q96FX2 82 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 CYSTM1Q9H1C7 97 aa7.16□□□□□ -1.26
LIG3-201ENST00000262327 TIRAPP58753 221 aa7.15□□□□□ -1.26
LIG3-201ENST00000262327 COX7CP15954 63 aa7.15□□□□□ -1.27
LIG3-201ENST00000262327 RPL36AP83881 106 aaKnown RBP7.15□□□□□ -1.27
LIG3-201ENST00000262327 Q5XG85 94 aa7.15□□□□□ -1.27
LIG3-201ENST00000262327 RPL36ALQ969Q0 106 aaKnown RBP7.15□□□□□ -1.27
LIG3-201ENST00000262327 INAFM1C9JVW0 142 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 FAM240AA0A1B0GVK7 77 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 K7EQD1 137 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 LINC01600Q96MT4 127 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 DSCR8Q96T75 97 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 IGLV5-45A0A087WSX0 123 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 IMUPQ9GZP8 106 aa7.14□□□□□ -1.27
LIG3-201ENST00000262327 TRGV2A0A075B6R0 118 aa7.13□□□□□ -1.27
LIG3-201ENST00000262327 IGLV5-39A0A0G2JS06 123 aa7.13□□□□□ -1.27
LIG3-201ENST00000262327 H3BT86 120 aa7.13□□□□□ -1.27
LIG3-201ENST00000262327 CRYGAP11844 174 aa7.13□□□□□ -1.27
LIG3-201ENST00000262327 C2orf48Q96LS8 159 aa7.13□□□□□ -1.27
LIG3-201ENST00000262327 Q9HAA7 133 aa7.13□□□□□ -1.27
LIG3-201ENST00000262327 UBE2L6O14933 153 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 TRACP01848 142 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 LINC01006Q8NI28 216 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 FAM218AQ96MZ4 157 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 C11orf68Q9H3H3 251 aaKnown RBP7.12□□□□□ -1.27
LIG3-201ENST00000262327 CDC42SE2Q9NRR3 84 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 TIMM17BO60830 172 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 CCL24O00175 119 aa7.12□□□□□ -1.27
LIG3-201ENST00000262327 ANK3Q12955 4377 aaKnown RBP7.11□□□□□ -1.27
LIG3-201ENST00000262327 SMCR5Q8TEV8 140 aa7.11□□□□□ -1.27
LIG3-201ENST00000262327 HIVEP2P31629 2446 aa7.11□□□□□ -1.27
LIG3-201ENST00000262327 COX7A2LO14548 114 aa7.1□□□□□ -1.27
LIG3-201ENST00000262327 C1orf43Q9BWL3 253 aa7.1□□□□□ -1.27
LIG3-201ENST00000262327 DAZ2Q13117 558 aaKnown RBP7.1□□□□□ -1.27
LIG3-201ENST00000262327 DAZ4Q86SG3 579 aaKnown RBP7.1□□□□□ -1.27
LIG3-201ENST00000262327 MIR7-3HGQ8N6C7 128 aa7.1□□□□□ -1.27
LIG3-201ENST00000262327 DAZ3Q9NR90 486 aaKnown RBP7.1□□□□□ -1.27
LIG3-201ENST00000262327 OTOGQ6ZRI0 2925 aa7.1□□□□□ -1.27
LIG3-201ENST00000262327 IGLV4-60A0A075B6I1 120 aa7.09□□□□□ -1.27
LIG3-201ENST00000262327 GIG44P09565 113 aaPredicted RBP7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms