RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Smim6Q3U0I6 56 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Tax1bp3Q9DBG9 124 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 1810011H11RikE9PVZ2 95 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Olfr218E9PWV2 313 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Scgb1b3J3QJY4 93 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Egr1P08046 533 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 MgpP19788 104 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Prickle3Q80VL3 624 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Gm9944Q8C559 102 aa13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Tln1P26039 2541 aaKnown RBP13.21□□□□□ -0.29
Shh-201ENSMUST00000002708 Olfr1369-ps1A0A140T8K7 317 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Hsbp1l1B2RXB2 72 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm9920D3YVZ2 140 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 KhkP97328 298 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr263Q7TQT8 317 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Q8C3M9 231 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr123Q8VFQ1 309 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr982Q8VGB3 321 aa13.21□□□□□ -0.3
Shh-201ENSMUST00000002708 Prrc2cQ3TLH4 2846 aaKnown RBP13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Ighv1-39A0A075B5V5 117 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Igkv1-133A0A0B4J1H8 120 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 AponG3X9D6 251 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 DdtO35215 118 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 P01783 136 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Timm8bP62077 83 aaKnown RBP13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr816Q8VFU2 312 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Ccl8Q9Z121 97 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Rab33bO35963 229 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Map6d1Q14BB9 191 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Scgb2b24Q7M747 112 aa13.2□□□□□ -0.3
Shh-201ENSMUST00000002708 Obp2bA2BHR0 176 aa13.19□□□□□ -0.3
Shh-201ENSMUST00000002708 Ptrh2Q8R2Y8 181 aaKnown RBP13.19□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1454Q8VFW2 307 aa13.19□□□□□ -0.3
Shh-201ENSMUST00000002708 4930583I09RikQ9D2E3 102 aa13.19□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm13030A2APQ6 143 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm21900J3QP38 180 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 P01759 136 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 IappP12968 93 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Atp6v0cP63082 155 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 SlpiP97430 131 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Rbm14Q8C2Q3 669 aaKnown RBP13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Vmn1r119E9Q4H3 307 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Slc25a17O70579 307 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Trav3-3Q5R1C3 114 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Ifna11Q61716 190 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Tbr1Q64336 681 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Tmem30bQ8BHG3 353 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Rbfox2Q8BP71 449 aaKnown RBP13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Siglec12Q91Y57 467 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Mogat1Q91ZV4 335 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Cldn16Q925N4 235 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Hcfc2Q9D968 241 aa13.18□□□□□ -0.3
Shh-201ENSMUST00000002708 Zfp979A2A799 407 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm15217A2CG07 155 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr177E9Q7W1 309 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 P04943 107 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Hoxb4P10284 250 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Mex3bQ69Z36 601 aaKnown RBP13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1419Q7TQS2 343 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 SelenokQ9JLJ1 94 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 DspE9Q557 2883 aaKnown RBP13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 LfngO09010 378 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Nkx3-1P97436 237 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr996Q7TRA0 314 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Vmn1r202Q8R259 302 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr127Q8VF25 323 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1262Q8VGN2 304 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Ndufa2Q9CQ75 99 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Psmg3Q9CZH3 122 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Dolpp1Q9JMF7 238 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Ighv3-6P18531 116 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 ErhP84089 104 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Snrnp40Q6PE01 358 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Zfp874aQ8BX23 447 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Rgs13Q8K443 158 aa13.17□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm21913J3KML9 361 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm21060J3KMU4 56 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm21776J3QPJ5 361 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Hes1P35428 282 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1535Q7TQU0 326 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Zmat4Q8BZ94 229 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Ap5s1Q9D742 170 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1331K7N684 317 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm15292L7N231 93 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Cd27P41272 250 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Slc25a5P51881 298 aaKnown RBP13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1465Q7TQR2 307 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr1333Q7TQV7 317 aa13.16□□□□□ -0.3
Shh-201ENSMUST00000002708 Ighv1-7A0A075B5T7 117 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Rpl19P84099 196 aaKnown RBP13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr411Q7TRW8 315 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Gm11733Q8BQP1 125 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Znf641Q8BZ34 422 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Stpg2Q8C8J0 561 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Dmrtc2Q8CGW9 370 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Olfr961Q9EQ84 314 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Klf13Q9JJZ6 289 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Gab2Q9Z1S8 665 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Ighv5-9A0A075B5Q2 117 aa13.15□□□□□ -0.3
Shh-201ENSMUST00000002708 Trav9-1A0A075B601 112 aa13.15□□□□□ -0.3
Retrieved 100 of 22,080 RNA–protein pairs in 63.4 ms