RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 A0A0J9YXV3 536 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 K7EQD1 137 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 HERVK_113P61574 105 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 NFE4Q86UQ8 179 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 SLC25A29Q8N8R3 303 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 SVIPQ8NHG7 77 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 CITED1Q99966 193 aa11.17□□□□□ -0.62
CLN3-251ENST00000636853 ZNF815PA8K554 130 aa11.16□□□□□ -0.62
CLN3-251ENST00000636853 INSL3P51460 131 aa11.16□□□□□ -0.62
CLN3-251ENST00000636853 UBE2D4Q9Y2X8 147 aa11.16□□□□□ -0.62
CLN3-251ENST00000636853 TMEM238LA0A1B0GVL6 79 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 A6NJY4 79 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 SH2D6Q7Z4S9 175 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 AMELXQ99217 191 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 OVOL2Q9BRP0 275 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 TSPEAR-AS2P59090 65 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 RPL36AP83881 106 aaKnown RBP11.15□□□□□ -0.62
CLN3-251ENST00000636853 RPL36ALQ969Q0 106 aaKnown RBP11.15□□□□□ -0.62
CLN3-251ENST00000636853 PLEKHB2Q96CS7 222 aa11.15□□□□□ -0.62
CLN3-251ENST00000636853 ATRQ13535 2644 aa11.14□□□□□ -0.63
CLN3-251ENST00000636853 GAGE12JA6NER3 117 aa11.14□□□□□ -0.63
CLN3-251ENST00000636853 GAGE4Q13068 117 aa11.14□□□□□ -0.63
CLN3-251ENST00000636853 GAGE5Q13069 117 aa11.14□□□□□ -0.63
CLN3-251ENST00000636853 TRBV10-1A0A0K0K1A3 114 aa11.14□□□□□ -0.63
CLN3-251ENST00000636853 ZNF22P17026 224 aaPredicted RBP11.14□□□□□ -0.63
CLN3-251ENST00000636853 SPANXA1Q9NS26 97 aa11.14□□□□□ -0.63
CLN3-251ENST00000636853 Q6ZUT4 128 aa11.13□□□□□ -0.63
CLN3-251ENST00000636853 F8P00451 2351 aa11.13□□□□□ -0.63
CLN3-251ENST00000636853 IGHV3-64A0A075B6Q5 118 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 CKS1BP61024 79 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 FOXI1Q12951 378 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 LYRM7Q5U5X0 104 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 SCGB1D4Q6XE38 83 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 TRRAPQ9Y4A5 3859 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 TEP1Q99973 2627 aaKnown RBP11.12□□□□□ -0.63
CLN3-251ENST00000636853 LOC100131303A0A0U1RQF7 123 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 TMEM223A0PJW6 202 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 APOMO95445 188 aa11.12□□□□□ -0.63
CLN3-251ENST00000636853 UBE2D1P51668 147 aa11.11□□□□□ -0.63
CLN3-251ENST00000636853 UBE2D3P61077 147 aa11.11□□□□□ -0.63
CLN3-251ENST00000636853 UBE2D2P62837 147 aa11.11□□□□□ -0.63
CLN3-251ENST00000636853 NTM-AS1Q6ZSK4 140 aa11.11□□□□□ -0.63
CLN3-251ENST00000636853 TRGV4A0A0C4DH28 118 aa11.11□□□□□ -0.63
CLN3-251ENST00000636853 CRYBA4P53673 196 aa11.11□□□□□ -0.63
CLN3-251ENST00000636853 J3QQQ9 107 aa11.1□□□□□ -0.63
CLN3-251ENST00000636853 MRPS36P82909 103 aaKnown RBP11.1□□□□□ -0.63
CLN3-251ENST00000636853 DAZ4Q86SG3 579 aaKnown RBP11.1□□□□□ -0.63
CLN3-251ENST00000636853 DAZ3Q9NR90 486 aaKnown RBP11.1□□□□□ -0.63
CLN3-251ENST00000636853 LINC00694P0DN24 101 aa11.1□□□□□ -0.63
CLN3-251ENST00000636853 FLNBO75369 2602 aaKnown RBP11.1□□□□□ -0.63
CLN3-251ENST00000636853 DEFB130BP0DP73 79 aa11.09□□□□□ -0.63
CLN3-251ENST00000636853 DEFB130AP0DP74 79 aa11.09□□□□□ -0.63
CLN3-251ENST00000636853 LGALS3P17931 250 aaKnown RBP11.09□□□□□ -0.63
CLN3-251ENST00000636853 DGAT2L7PQ6IED9 249 aa11.09□□□□□ -0.63
CLN3-251ENST00000636853 PGPEP1Q9NXJ5 209 aa11.09□□□□□ -0.63
CLN3-251ENST00000636853 X6R8D5 127 aa11.09□□□□□ -0.63
CLN3-251ENST00000636853 LEPROTO15243 131 aa11.08□□□□□ -0.64
CLN3-251ENST00000636853 FHL2Q14192 279 aa11.08□□□□□ -0.64
CLN3-251ENST00000636853 CDIP1Q9H305 208 aa11.08□□□□□ -0.64
CLN3-251ENST00000636853 TRBV6-4A0A1B0GX49 114 aa11.07□□□□□ -0.64
CLN3-251ENST00000636853 SMCPP49901 116 aaPredicted RBP11.07□□□□□ -0.64
CLN3-251ENST00000636853 SBSPONQ8IVN8 264 aa11.07□□□□□ -0.64
CLN3-251ENST00000636853 A0A0J9YY99 117 aa11.07□□□□□ -0.64
CLN3-251ENST00000636853 TRBV20-1A0A075B6N2 111 aa11.06□□□□□ -0.64
CLN3-251ENST00000636853 SRSF9Q13242 221 aaKnown RBP eCLIP11.06□□□□□ -0.64
CLN3-251ENST00000636853 PPDPFLQ8WWR9 84 aa11.06□□□□□ -0.64
CLN3-251ENST00000636853 NBEAL2Q6ZNJ1 2754 aa11.06□□□□□ -0.64
CLN3-251ENST00000636853 TRAV8-3A0A0A6YYJ7 113 aa11.06□□□□□ -0.64
CLN3-251ENST00000636853 TINCRA0A1B0GVN0 87 aa11.06□□□□□ -0.64
CLN3-251ENST00000636853 TIMM21Q9BVV7 248 aa11.06□□□□□ -0.64
CLN3-251ENST00000636853 M0QXV9 152 aa11.05□□□□□ -0.64
CLN3-251ENST00000636853 DEFB135Q30KP9 77 aa11.05□□□□□ -0.64
CLN3-251ENST00000636853 KIR2DL5BQ8NHK3 375 aa11.05□□□□□ -0.64
CLN3-251ENST00000636853 TSPAN13O95857 204 aa11.05□□□□□ -0.64
CLN3-251ENST00000636853 WFDC9Q8NEX5 89 aa11.05□□□□□ -0.64
CLN3-251ENST00000636853 GEMIN7Q9H840 131 aaKnown RBP11.05□□□□□ -0.64
CLN3-251ENST00000636853 IGHV3-30-3P0DP02 117 aa11.04□□□□□ -0.64
CLN3-251ENST00000636853 TEN1Q86WV5 123 aa11.04□□□□□ -0.64
CLN3-251ENST00000636853 DEFB4AO15263 64 aa11.03□□□□□ -0.64
CLN3-251ENST00000636853 SPINK8P0C7L1 97 aa11.03□□□□□ -0.64
CLN3-251ENST00000636853 LINC00612Q8N6U2 182 aa11.03□□□□□ -0.64
CLN3-251ENST00000636853 SMIM9A6NGZ8 99 aa11.02□□□□□ -0.64
CLN3-251ENST00000636853 TMEM243Q9BU79 118 aa11.02□□□□□ -0.64
CLN3-251ENST00000636853 A8MZ25 164 aa11.02□□□□□ -0.65
CLN3-251ENST00000636853 COX6A2Q02221 97 aa11.02□□□□□ -0.65
CLN3-251ENST00000636853 CDKN2A-AS1Q9UH64 79 aa11.02□□□□□ -0.65
CLN3-251ENST00000636853 IGHV1-58A0A0C4DH39 117 aa11.01□□□□□ -0.65
CLN3-251ENST00000636853 UBE2L6O14933 153 aa11.01□□□□□ -0.65
CLN3-251ENST00000636853 APOC4P55056 127 aa11.01□□□□□ -0.65
CLN3-251ENST00000636853 FAM222AQ5U5X8 452 aa11.01□□□□□ -0.65
CLN3-251ENST00000636853 TMEM262E9PQX1 116 aa11.01□□□□□ -0.65
CLN3-251ENST00000636853 C10orf126Q8N4M7 172 aa11.01□□□□□ -0.65
CLN3-251ENST00000636853 CSDC2Q9Y534 153 aaKnown RBP11.01□□□□□ -0.65
CLN3-251ENST00000636853 TRAV26-1A0A087WT03 109 aa11□□□□□ -0.65
CLN3-251ENST00000636853 PSMB2P49721 201 aa11□□□□□ -0.65
CLN3-251ENST00000636853 VSIG2Q96IQ7 327 aa11□□□□□ -0.65
CLN3-251ENST00000636853 CDC42SE2Q9NRR3 84 aa11□□□□□ -0.65
CLN3-251ENST00000636853 TRAV13-1A0A0B4J241 112 aa11□□□□□ -0.65
CLN3-251ENST00000636853 KRTAP24-1Q3LI83 254 aa11□□□□□ -0.65
CLN3-251ENST00000636853 IGHV3-30P01768 117 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms