RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 TRACP01848 142 aa7.97□□□□□ -1.13
UPF3A-212ENST00000619079 DEFB1P60022 68 aa7.97□□□□□ -1.13
UPF3A-212ENST00000619079 FAM19A5Q7Z5A7 132 aaPredicted RBP7.97□□□□□ -1.13
UPF3A-212ENST00000619079 CELSR1Q9NYQ6 3014 aa7.96□□□□□ -1.13
UPF3A-212ENST00000619079 IGHV3-16A0A0C4DH30 117 aa7.96□□□□□ -1.14
UPF3A-212ENST00000619079 IGHV4-61A0A0C4DH41 118 aa7.96□□□□□ -1.14
UPF3A-212ENST00000619079 WIPF1O43516 503 aa7.96□□□□□ -1.14
UPF3A-212ENST00000619079 TRAV41A0A0B4J266 112 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 LOC107984640A0A0U1RRK4 108 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 FAM222AQ5U5X8 452 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 UNQ9165/PRO28630Q6UXU0 137 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 Q6ZSV7 163 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 DUX5Q96PT3 197 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 OTOGQ6ZRI0 2925 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 NPC2P61916 151 aa7.95□□□□□ -1.14
UPF3A-212ENST00000619079 TRAV12-3A0A0B4J271 114 aa7.94□□□□□ -1.14
UPF3A-212ENST00000619079 HIST1H4AP62805 103 aaKnown RBP7.94□□□□□ -1.14
UPF3A-212ENST00000619079 DAZ2Q13117 558 aaKnown RBP7.94□□□□□ -1.14
UPF3A-212ENST00000619079 DAZ4Q86SG3 579 aaKnown RBP7.94□□□□□ -1.14
UPF3A-212ENST00000619079 SIRPDQ9H106 197 aa7.94□□□□□ -1.14
UPF3A-212ENST00000619079 EDA2RQ9HAV5 297 aa7.94□□□□□ -1.14
UPF3A-212ENST00000619079 DAZ1Q9NQZ3 744 aaKnown RBP7.94□□□□□ -1.14
UPF3A-212ENST00000619079 DAZ3Q9NR90 486 aaKnown RBP7.94□□□□□ -1.14
UPF3A-212ENST00000619079 NDUFA1O15239 70 aa7.94□□□□□ -1.14
UPF3A-212ENST00000619079 C5orf56Q8N8D9 126 aa7.94□□□□□ -1.14
UPF3A-212ENST00000619079 ITPR3Q14573 2671 aa7.94□□□□□ -1.14
UPF3A-212ENST00000619079 TMEM258P61165 79 aa7.93□□□□□ -1.14
UPF3A-212ENST00000619079 CITED2Q99967 270 aaPredicted RBP7.93□□□□□ -1.14
UPF3A-212ENST00000619079 C19orf54Q5BKX5 351 aa7.93□□□□□ -1.14
UPF3A-212ENST00000619079 C2orf48Q96LS8 159 aa7.93□□□□□ -1.14
UPF3A-212ENST00000619079 SVEP1Q4LDE5 3571 aa7.93□□□□□ -1.14
UPF3A-212ENST00000619079 BAALC-AS2P0C853 105 aa7.92□□□□□ -1.14
UPF3A-212ENST00000619079 USMG5Q96IX5 58 aa7.92□□□□□ -1.14
UPF3A-212ENST00000619079 RHPN1-AS1Q9BWJ2 59 aa7.92□□□□□ -1.14
UPF3A-212ENST00000619079 SAA4P35542 130 aa7.92□□□□□ -1.14
UPF3A-212ENST00000619079 KLK5Q9Y337 293 aaPredicted RBP7.92□□□□□ -1.14
UPF3A-212ENST00000619079 MED13LQ71F56 2210 aa7.92□□□□□ -1.14
UPF3A-212ENST00000619079 MAST4O15021 2626 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 LMO4P61968 165 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 LINC00308Q8TCZ7 52 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 FAM104AQ969W3 186 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 MOB4Q9Y3A3 225 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 IGHV1OR15-1A0A075B7D0 117 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 H3BUA1 57 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 TIRAPP58753 221 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 ZNF415Q09FC8 603 aa7.91□□□□□ -1.14
UPF3A-212ENST00000619079 FLNAP21333 2647 aaKnown RBP7.91□□□□□ -1.14
UPF3A-212ENST00000619079 IGKV3-7A0A075B6H7 116 aa7.9□□□□□ -1.14
UPF3A-212ENST00000619079 A0A096LNT2 108 aa7.9□□□□□ -1.14
UPF3A-212ENST00000619079 RPL18AQ02543 176 aaKnown RBP7.9□□□□□ -1.14
UPF3A-212ENST00000619079 BEAN1Q3B7T3 259 aa7.9□□□□□ -1.14
UPF3A-212ENST00000619079 B4DSR2 109 aa7.9□□□□□ -1.15
UPF3A-212ENST00000619079 TRBV12-3P01733 135 aa7.9□□□□□ -1.15
UPF3A-212ENST00000619079 OVOL2Q9BRP0 275 aa7.9□□□□□ -1.15
UPF3A-212ENST00000619079 TRAV25A0A0B4J276 109 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 MSMBP08118 114 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 ZFP36P26651 326 aaKnown RBP7.89□□□□□ -1.15
UPF3A-212ENST00000619079 LINC01356Q8N9X3 169 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 IGLV5-45A0A087WSX0 123 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 IGHV4-31P0DP07 118 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 UBE2D4Q9Y2X8 147 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 CSPG4Q6UVK1 2322 aa7.89□□□□□ -1.15
UPF3A-212ENST00000619079 ACANP16112 2415 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 hADV29S1A0JD25 119 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 A8MZ25 164 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 DNAL4O96015 105 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 SERP2Q8N6R1 65 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 PF4V1P10720 104 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 SMR3AQ99954 134 aa7.88□□□□□ -1.15
UPF3A-212ENST00000619079 ZANQ9Y493 2812 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 K7EMT4 169 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 PF4P02776 101 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 IGHV3OR16-10A0A075B7F0 116 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 MALP21145 153 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 RNASE13Q5GAN3 156 aaKnown RBP7.87□□□□□ -1.15
UPF3A-212ENST00000619079 Q6JHZ5 121 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 DPH3Q96FX2 82 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 CDKN2A-AS1Q9UH64 79 aa7.87□□□□□ -1.15
UPF3A-212ENST00000619079 SNRPD3P62318 126 aaKnown RBP7.86□□□□□ -1.15
UPF3A-212ENST00000619079 Q9H8V8 135 aa7.86□□□□□ -1.15
UPF3A-212ENST00000619079 IGLV5-39A0A0G2JS06 123 aa7.86□□□□□ -1.15
UPF3A-212ENST00000619079 PRIMA1Q86XR5 153 aa7.86□□□□□ -1.15
UPF3A-212ENST00000619079 CHCHD7Q9BUK0 85 aa7.86□□□□□ -1.15
UPF3A-212ENST00000619079 C22orf24Q9Y442 160 aa7.86□□□□□ -1.15
UPF3A-212ENST00000619079 TLN2Q9Y4G6 2542 aa7.85□□□□□ -1.15
UPF3A-212ENST00000619079 TRAV12-2A0A075B6T6 113 aa7.85□□□□□ -1.15
UPF3A-212ENST00000619079 HIST2H2BDQ6DRA6 164 aa7.85□□□□□ -1.15
UPF3A-212ENST00000619079 F8P00451 2351 aa7.85□□□□□ -1.15
UPF3A-212ENST00000619079 HIVEP1P15822 2718 aa7.85□□□□□ -1.15
UPF3A-212ENST00000619079 CR1P17927 2039 aa7.85□□□□□ -1.15
UPF3A-212ENST00000619079 IGHV3-11P01762 117 aa7.84□□□□□ -1.15
UPF3A-212ENST00000619079 Q8N2B8 174 aa7.84□□□□□ -1.15
UPF3A-212ENST00000619079 TRAV13-2A0A0B4J235 113 aa7.84□□□□□ -1.15
UPF3A-212ENST00000619079 LY6G6DO95868 133 aa7.84□□□□□ -1.15
UPF3A-212ENST00000619079 PIK3CD-AS1Q5SR53 167 aa7.84□□□□□ -1.15
UPF3A-212ENST00000619079 RNF152Q8N8N0 203 aa7.83□□□□□ -1.16
UPF3A-212ENST00000619079 TRAV13-1A0A0B4J241 112 aa7.83□□□□□ -1.16
UPF3A-212ENST00000619079 IGHG2P01859 326 aa7.83□□□□□ -1.16
UPF3A-212ENST00000619079 RPL28P46779 137 aaKnown RBP7.83□□□□□ -1.16
UPF3A-212ENST00000619079 UPK3BQ9BT76 320 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms