RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 RPL18AQ02543 176 aaKnown RBP6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 OVOL2Q9BRP0 275 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 CNFNQ9BYD5 112 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 CDKN2A-AS1Q9UH64 79 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 KALRNO60229 2985 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 COX7A2LO14548 114 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 HERV-K104P63124 156 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 Q6ZSN1 163 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 LINC00269Q8N2A0 174 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 MIR7-3HGQ8N6C7 128 aa6.53□□□□□ -1.36
PDLIM5-222ENST00000615540 NDUFA7O95182 113 aa6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 BAALC-AS2P0C853 105 aa6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 MRPL23Q16540 153 aaKnown RBP6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 KLK12Q9UKR0 248 aa6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 NKAPP1Q8N9T2 125 aa6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 UBE2D4Q9Y2X8 147 aa6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 TRBV27A0A0K0K1C4 114 aa6.52□□□□□ -1.37
PDLIM5-222ENST00000615540 MIAQ16674 131 aa6.51□□□□□ -1.37
PDLIM5-222ENST00000615540 DEFB105AQ8NG35 78 aa6.51□□□□□ -1.37
PDLIM5-222ENST00000615540 RBMY1FQ15415 496 aaKnown RBP6.51□□□□□ -1.37
PDLIM5-222ENST00000615540 ODF3L2Q3SX64 289 aa6.51□□□□□ -1.37
PDLIM5-222ENST00000615540 ANKHD1Q8IWZ3 2542 aaKnown RBP6.5□□□□□ -1.37
PDLIM5-222ENST00000615540 IGLV4-69A0A075B6H9 119 aa6.5□□□□□ -1.37
PDLIM5-222ENST00000615540 POLR2KP53803 58 aaKnown RBP6.5□□□□□ -1.37
PDLIM5-222ENST00000615540 HIGD2BQ4VC39 106 aa6.5□□□□□ -1.37
PDLIM5-222ENST00000615540 ZNF580Q9UK33 172 aa6.5□□□□□ -1.37
PDLIM5-222ENST00000615540 PIK3CD-AS1Q5SR53 167 aa6.5□□□□□ -1.37
PDLIM5-222ENST00000615540 G3V4G9 280 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 HILS1P60008 231 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 IGLV2-18A0A075B6J9 118 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 IGHV4-28A0A0C4DH34 117 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 LINC01620Q4KN68 170 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 PRO0255Q9UI72 69 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 TSPEAR-AS2P59090 65 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 CAMK2N2Q96S95 79 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 TRBV6-5A0A0K0K1A5 114 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 TM2D2Q9BX73 214 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 ZMAT4Q9H898 229 aa6.49□□□□□ -1.37
PDLIM5-222ENST00000615540 COX8CQ7Z4L0 72 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 FOXI1Q12951 378 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 TRBV10-1A0A0K0K1A3 114 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 IGIPA6NJ69 53 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 COX6A2Q02221 97 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 IFITM1P13164 125 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 REG3AQ06141 175 aa6.48□□□□□ -1.37
PDLIM5-222ENST00000615540 DOPEY2Q9Y3R5 2298 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 TRBV6-8A0A0A6YYG3 113 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 PRRC2AP48634 2157 aaKnown RBP6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 INSL3P51460 131 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 LINC00526Q96FQ7 95 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 CHCHD7Q9BUK0 85 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 C1orf43Q9BWL3 253 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 CHCHD10Q8WYQ3 142 aaPredicted RBP6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 ORMDL1Q9P0S3 153 aa6.47□□□□□ -1.37
PDLIM5-222ENST00000615540 C1orf158Q8N1D5 194 aa6.46□□□□□ -1.37
PDLIM5-222ENST00000615540 LINC00694P0DN24 101 aa6.46□□□□□ -1.37
PDLIM5-222ENST00000615540 UBE2D1P51668 147 aa6.46□□□□□ -1.37
PDLIM5-222ENST00000615540 SPAG11BQ08648 103 aa6.46□□□□□ -1.38
PDLIM5-222ENST00000615540 RETNQ9HD89 108 aa6.46□□□□□ -1.38
PDLIM5-222ENST00000615540 TRIAP1O43715 76 aa6.46□□□□□ -1.38
PDLIM5-222ENST00000615540 DSCAML1Q8TD84 2053 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 A0A0B4J2C4 111 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 LECT2O14960 151 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 NBPF19A0A087WUL8 3843 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 NCOR2Q9Y618 2525 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 TEX49A0A1B0GTD5 131 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 CLUHP3Q96NS8 147 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 SPANXB1Q9NS25 103 aaPredicted RBP6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 SLPIP03973 132 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 TEN1Q86WV5 123 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 TRBV10-2A0A0K0K1G8 114 aa6.45□□□□□ -1.38
PDLIM5-222ENST00000615540 TRBV6-4A0A1B0GX49 114 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 NDUFA1O15239 70 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 INAFM2P0DMQ5 153 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 LINC00308Q8TCZ7 52 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 C11orf45Q8TAV5 145 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 PYGO1Q9Y3Y4 419 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 LYRM9A8MSI8 78 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 BRI3O95415 125 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 RPL32P62910 135 aaKnown RBP6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 OXLD1Q5BKU9 147 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 FAM19A4Q96LR4 140 aa6.44□□□□□ -1.38
PDLIM5-222ENST00000615540 DSCR8Q96T75 97 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 UBE2D3P61077 147 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 UBE2D2P62837 147 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 FAM208BQ5VWN6 2430 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 POM121L12Q8N7R1 296 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 CRYBA4P53673 196 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 HAMPP81172 84 aa6.43□□□□□ -1.38
PDLIM5-222ENST00000615540 GHRHP01286 108 aa6.42□□□□□ -1.38
PDLIM5-222ENST00000615540 IGKV3D-7A0A0C4DH55 119 aa6.42□□□□□ -1.38
PDLIM5-222ENST00000615540 F8WEM9 126 aa6.42□□□□□ -1.38
PDLIM5-222ENST00000615540 C14orf132Q9NPU4 83 aa6.42□□□□□ -1.38
PDLIM5-222ENST00000615540 H7C423 109 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 C16orf95Q9H693 158 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 TIRAPP58753 221 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 CHD8Q9HCK8 2581 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 IGLV1-51P01701 117 aa6.41□□□□□ -1.38
PDLIM5-222ENST00000615540 SMIM9A6NGZ8 99 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms