RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 IGHV4-28A0A0C4DH34 117 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 A0A0J9YXV3 536 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 TMEM223A0PJW6 202 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 UBE2L6O14933 153 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 LINC00694P0DN24 101 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 ZNF22P17026 224 aaPredicted RBP10.02□□□□□ -0.81
LIG3-205ENST00000585941 OXLD1Q5BKU9 147 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 Q6ZUT4 128 aa10.02□□□□□ -0.81
LIG3-205ENST00000585941 Q8NAQ8 132 aa10.01□□□□□ -0.81
LIG3-205ENST00000585941 TEX48A0A1B0GUV7 120 aa10□□□□□ -0.81
LIG3-205ENST00000585941 ZNF815PA8K554 130 aa10□□□□□ -0.81
LIG3-205ENST00000585941 LEPROTO15243 131 aa10□□□□□ -0.81
LIG3-205ENST00000585941 PLEKHB2Q96CS7 222 aa10□□□□□ -0.81
LIG3-205ENST00000585941 TMEM101Q96IK0 257 aa10□□□□□ -0.81
LIG3-205ENST00000585941 LOC100131303A0A0U1RQF7 123 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 ZNF25P17030 456 aaPredicted RBP9.99□□□□□ -0.81
LIG3-205ENST00000585941 UBE2D1P51668 147 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 DAD1P61803 113 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 AMMECR1LQ6DCA0 310 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 OR5A1Q8NGJ0 315 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 TRBV6-8A0A0A6YYG3 113 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 J3QQQ9 107 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 SPART-AS1P0CW21 52 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 LGALS3P17931 250 aaKnown RBP9.99□□□□□ -0.81
LIG3-205ENST00000585941 TIRAPP58753 221 aa9.99□□□□□ -0.81
LIG3-205ENST00000585941 GEMIN7Q9H840 131 aaKnown RBP9.99□□□□□ -0.81
LIG3-205ENST00000585941 STAB1Q9NY15 2570 aa9.98□□□□□ -0.81
LIG3-205ENST00000585941 KRTAP10-11P60412 298 aa9.98□□□□□ -0.81
LIG3-205ENST00000585941 TM2D2Q9BX73 214 aa9.98□□□□□ -0.81
LIG3-205ENST00000585941 COX11Q9Y6N1 276 aa9.98□□□□□ -0.81
LIG3-205ENST00000585941 ATP5G1P05496 136 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 GYPEP15421 78 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 RNASE13Q5GAN3 156 aaKnown RBP9.97□□□□□ -0.81
LIG3-205ENST00000585941 SCGB1D4Q6XE38 83 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 FAM19A3Q7Z5A8 133 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 CEND1Q8N111 149 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 ATP6V0E2Q8NHE4 81 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 CDC42SE2Q9NRR3 84 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 FBN1P35555 2871 aaKnown RBP9.97□□□□□ -0.81
LIG3-205ENST00000585941 NBEAL2Q6ZNJ1 2754 aa9.97□□□□□ -0.81
LIG3-205ENST00000585941 H3BRM9 83 aa9.96□□□□□ -0.81
LIG3-205ENST00000585941 PAX4O43316 350 aa9.96□□□□□ -0.81
LIG3-205ENST00000585941 GCSHP23434 173 aa9.96□□□□□ -0.81
LIG3-205ENST00000585941 HERVK_113P63121 156 aa9.96□□□□□ -0.81
LIG3-205ENST00000585941 HIST1H4GQ99525 98 aa9.96□□□□□ -0.81
LIG3-205ENST00000585941 IGLV5-45A0A087WSX0 123 aa9.96□□□□□ -0.82
LIG3-205ENST00000585941 TAX1BP3O14907 124 aa9.96□□□□□ -0.82
LIG3-205ENST00000585941 TRRAPQ9Y4A5 3859 aa9.95□□□□□ -0.82
LIG3-205ENST00000585941 LINC00469Q8N7U9 141 aa9.95□□□□□ -0.82
LIG3-205ENST00000585941 IGHV1-58A0A0C4DH39 117 aa9.94□□□□□ -0.82
LIG3-205ENST00000585941 DEFB4AO15263 64 aa9.94□□□□□ -0.82
LIG3-205ENST00000585941 PTTG1IPP53801 180 aa9.94□□□□□ -0.82
LIG3-205ENST00000585941 IGHV3-30-3P0DP02 117 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 TSPEAR-AS2P59090 65 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 CHCHD5Q9BSY4 110 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 SPANXB1Q9NS25 103 aaPredicted RBP9.93□□□□□ -0.82
LIG3-205ENST00000585941 TRAV26-1A0A087WT03 109 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 A0A0J9YY99 117 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 SH2D6Q7Z4S9 175 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 VSIG2Q96IQ7 327 aa9.93□□□□□ -0.82
LIG3-205ENST00000585941 SMIM13P0DJ93 91 aa9.92□□□□□ -0.82
LIG3-205ENST00000585941 FXYD2P54710 66 aa9.92□□□□□ -0.82
LIG3-205ENST00000585941 LINC00242Q5T6M2 205 aa9.92□□□□□ -0.82
LIG3-205ENST00000585941 CELA1Q9UNI1 258 aa9.92□□□□□ -0.82
LIG3-205ENST00000585941 TMEM238LA0A1B0GVL6 79 aa9.91□□□□□ -0.82
LIG3-205ENST00000585941 A6NJY4 79 aa9.91□□□□□ -0.82
LIG3-205ENST00000585941 GAGE6Q13070 117 aa9.91□□□□□ -0.82
LIG3-205ENST00000585941 SRSF9Q13242 221 aaKnown RBP eCLIP9.91□□□□□ -0.82
LIG3-205ENST00000585941 SAMD5Q5TGI4 173 aa9.9□□□□□ -0.82
LIG3-205ENST00000585941 CDKN2A-AS1Q9UH64 79 aa9.9□□□□□ -0.82
LIG3-205ENST00000585941 COL6A5A8TX70 2615 aa9.9□□□□□ -0.82
LIG3-205ENST00000585941 IGHV3-64A0A075B6Q5 118 aa9.9□□□□□ -0.83
LIG3-205ENST00000585941 TRAV13-1A0A0B4J241 112 aa9.9□□□□□ -0.83
LIG3-205ENST00000585941 A0A1B0GUV1 79 aa9.9□□□□□ -0.83
LIG3-205ENST00000585941 C9orf118A6NHY6 69 aa9.9□□□□□ -0.83
LIG3-205ENST00000585941 G3V4G9 280 aa9.9□□□□□ -0.83
LIG3-205ENST00000585941 MRPL23Q16540 153 aaKnown RBP9.9□□□□□ -0.83
LIG3-205ENST00000585941 C11orf68Q9H3H3 251 aaKnown RBP9.9□□□□□ -0.83
LIG3-205ENST00000585941 F5H768 121 aa9.89□□□□□ -0.83
LIG3-205ENST00000585941 SPINK8P0C7L1 97 aa9.89□□□□□ -0.83
LIG3-205ENST00000585941 TRAV8-3A0A0A6YYJ7 113 aa9.88□□□□□ -0.83
LIG3-205ENST00000585941 TMEM238C9JI98 176 aa9.88□□□□□ -0.83
LIG3-205ENST00000585941 ZFAND6Q6FIF0 208 aa9.88□□□□□ -0.83
LIG3-205ENST00000585941 PKD1L1Q8TDX9 2849 aa9.88□□□□□ -0.83
LIG3-205ENST00000585941 IGLV5-39A0A0G2JS06 123 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 COX6A2Q02221 97 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 VAMP3Q15836 100 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 Q6ZVH6 145 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 NHP2Q9NX24 153 aaKnown RBP9.87□□□□□ -0.83
LIG3-205ENST00000585941 NDUFA12Q9UI09 145 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 ICOSQ9Y6W8 199 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 A0A1B0GWB2 263 aa9.87□□□□□ -0.83
LIG3-205ENST00000585941 IGLV4-60A0A075B6I1 120 aa9.86□□□□□ -0.83
LIG3-205ENST00000585941 A0A0J9YXY3 114 aa9.86□□□□□ -0.83
LIG3-205ENST00000585941 K7EP13 123 aa9.86□□□□□ -0.83
LIG3-205ENST00000585941 CCL25O15444 150 aa9.86□□□□□ -0.83
LIG3-205ENST00000585941 TMEM262E9PQX1 116 aa9.85□□□□□ -0.83
LIG3-205ENST00000585941 H3BNG1 76 aa9.85□□□□□ -0.83
LIG3-205ENST00000585941 HTN3P15516 51 aa9.85□□□□□ -0.83
LIG3-205ENST00000585941 UBE2V1Q13404 147 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 111.9 ms