RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TIMM21Q9BVV7 248 aa17.14■□□□□ 0.33
SHMT1-207ENST00000580002 PYY3Q5JQD4 70 aa17.13■□□□□ 0.33
SHMT1-207ENST00000580002 DGAT2L7PQ6IED9 249 aa17.13■□□□□ 0.33
SHMT1-207ENST00000580002 H7C423 109 aa17.12■□□□□ 0.33
SHMT1-207ENST00000580002 CDPF1Q6NVV7 123 aa17.12■□□□□ 0.33
SHMT1-207ENST00000580002 MUC7Q8TAX7 377 aa17.12■□□□□ 0.33
SHMT1-207ENST00000580002 CDC42SE2Q9NRR3 84 aa17.12■□□□□ 0.33
SHMT1-207ENST00000580002 KLK5Q9Y337 293 aaPredicted RBP17.12■□□□□ 0.33
SHMT1-207ENST00000580002 OR5A1Q8NGJ0 315 aa17.11■□□□□ 0.33
SHMT1-207ENST00000580002 LINC01549A6NIU2 74 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 IGHV3-30P01768 117 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 IGHV3-33P01772 117 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 IGHV3-30-3P0DP02 117 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 IGHV3-30-5P0DP03 117 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 WWC2-AS2Q96NR7 200 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 CST9LQ9H4G1 147 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 TRAV8-6A0A0B4J262 113 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 ZNF664Q8N3J9 261 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 AMELXQ99217 191 aa17.1■□□□□ 0.33
SHMT1-207ENST00000580002 CSDC2Q9Y534 153 aaKnown RBP17.1■□□□□ 0.33
SHMT1-207ENST00000580002 SCGB1D1O95968 90 aa17.09■□□□□ 0.33
SHMT1-207ENST00000580002 SMIM6P0DI80 62 aa17.09■□□□□ 0.33
SHMT1-207ENST00000580002 ODF1Q14990 250 aa17.09■□□□□ 0.33
SHMT1-207ENST00000580002 VCX2Q9H322 139 aa17.09■□□□□ 0.33
SHMT1-207ENST00000580002 DNAH1Q9P2D7 4330 aa17.08■□□□□ 0.33
SHMT1-207ENST00000580002 MRPS36P82909 103 aaKnown RBP17.08■□□□□ 0.33
SHMT1-207ENST00000580002 PET117Q6UWS5 81 aa17.08■□□□□ 0.33
SHMT1-207ENST00000580002 TMEM101Q96IK0 257 aa17.08■□□□□ 0.33
SHMT1-207ENST00000580002 IGKV3OR2-268A0A0C4DH90 116 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 CCL18P55774 89 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 JOSD1Q15040 202 aaPredicted RBP17.07■□□□□ 0.32
SHMT1-207ENST00000580002 PMVKQ15126 192 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 CLPSL2Q6UWE3 100 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 LINC00518Q8N0U6 118 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 ATOH7Q8N100 152 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 MRPL35Q9NZE8 188 aaKnown RBP17.07■□□□□ 0.32
SHMT1-207ENST00000580002 A0A1B0GUV1 79 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 LINC01545Q5VT33 79 aa17.07■□□□□ 0.32
SHMT1-207ENST00000580002 MRPS16Q9Y3D3 137 aaKnown RBP17.07■□□□□ 0.32
SHMT1-207ENST00000580002 A0A087WX48 190 aa17.06■□□□□ 0.32
SHMT1-207ENST00000580002 ZNF25P17030 456 aaPredicted RBP17.06■□□□□ 0.32
SHMT1-207ENST00000580002 TRAV12-1A0A0B4J245 112 aa17.05■□□□□ 0.32
SHMT1-207ENST00000580002 TEX43Q6ZNM6 134 aa17.05■□□□□ 0.32
SHMT1-207ENST00000580002 VPS13DQ5THJ4 4388 aa17.04■□□□□ 0.32
SHMT1-207ENST00000580002 CHTOPQ9Y3Y2 248 aaKnown RBP17.04■□□□□ 0.32
SHMT1-207ENST00000580002 IGLV4-69A0A075B6H9 119 aa17.03■□□□□ 0.32
SHMT1-207ENST00000580002 ANGP03950 147 aaKnown RBP17.03■□□□□ 0.32
SHMT1-207ENST00000580002 LGALS9CQ6DKI2 356 aa17.03■□□□□ 0.32
SHMT1-207ENST00000580002 LINC00269Q8N2A0 174 aa17.03■□□□□ 0.32
SHMT1-207ENST00000580002 TRAV13-1A0A0B4J241 112 aa17.02■□□□□ 0.32
SHMT1-207ENST00000580002 A0A0J9YXV3 536 aa17.02■□□□□ 0.32
SHMT1-207ENST00000580002 KLK12Q9UKR0 248 aa17.02■□□□□ 0.32
SHMT1-207ENST00000580002 NPSP0C0P6 89 aa17.02■□□□□ 0.31
SHMT1-207ENST00000580002 MAJINQ3KP22 176 aa17■□□□□ 0.31
SHMT1-207ENST00000580002 C12orf57Q99622 126 aa17■□□□□ 0.31
SHMT1-207ENST00000580002 UBE2D1P51668 147 aa17■□□□□ 0.31
SHMT1-207ENST00000580002 SMAGPQ0VAQ4 97 aa17■□□□□ 0.31
SHMT1-207ENST00000580002 PAPPA-AS1Q5QFB9 102 aa17■□□□□ 0.31
SHMT1-207ENST00000580002 COX6A2Q02221 97 aa16.99■□□□□ 0.31
SHMT1-207ENST00000580002 C11orf86A6NJI1 115 aa16.98■□□□□ 0.31
SHMT1-207ENST00000580002 F8VRH5 84 aa16.98■□□□□ 0.31
SHMT1-207ENST00000580002 SIVA1O15304 175 aa16.98■□□□□ 0.31
SHMT1-207ENST00000580002 UPK3BQ9BT76 320 aa16.98■□□□□ 0.31
SHMT1-207ENST00000580002 LINC01556Q5JQF7 62 aa16.97■□□□□ 0.31
SHMT1-207ENST00000580002 CASC10Q5T4H9 136 aa16.97■□□□□ 0.31
SHMT1-207ENST00000580002 UBE2DNLQ8IWF7 75 aa16.97■□□□□ 0.31
SHMT1-207ENST00000580002 Q9H8V8 135 aa16.97■□□□□ 0.31
SHMT1-207ENST00000580002 DNAH10OSP0CZ25 163 aa16.97■□□□□ 0.31
SHMT1-207ENST00000580002 ENHOQ6UWT2 76 aa16.97■□□□□ 0.31
SHMT1-207ENST00000580002 TCTAP57738 103 aa16.96■□□□□ 0.31
SHMT1-207ENST00000580002 C2orf88Q9BSF0 95 aa16.96■□□□□ 0.31
SHMT1-207ENST00000580002 LINC00959A0A1B0GUT2 108 aa16.95■□□□□ 0.3
SHMT1-207ENST00000580002 C20orf202A1L168 122 aa16.95■□□□□ 0.3
SHMT1-207ENST00000580002 REG3AQ06141 175 aa16.95■□□□□ 0.3
SHMT1-207ENST00000580002 LINC00242Q5T6M2 205 aa16.95■□□□□ 0.3
SHMT1-207ENST00000580002 DPM2O94777 84 aa16.94■□□□□ 0.3
SHMT1-207ENST00000580002 IGLV10-54A0A075B6I4 117 aa16.94■□□□□ 0.3
SHMT1-207ENST00000580002 hDV102S1A0JD36 115 aa16.94■□□□□ 0.3
SHMT1-207ENST00000580002 IGKCP01834 107 aa16.94■□□□□ 0.3
SHMT1-207ENST00000580002 PKIAP61925 76 aa16.93■□□□□ 0.3
SHMT1-207ENST00000580002 STPG4Q8N801 248 aa16.93■□□□□ 0.3
SHMT1-207ENST00000580002 UBE2WQ96B02 151 aa16.93■□□□□ 0.3
SHMT1-207ENST00000580002 IGLC3P0DOY3 106 aa16.92■□□□□ 0.3
SHMT1-207ENST00000580002 CHAC1Q9BUX1 264 aa16.92■□□□□ 0.3
SHMT1-207ENST00000580002 PRR34Q9NV39 138 aa16.92■□□□□ 0.3
SHMT1-207ENST00000580002 KRTAP1-5Q9BYS1 174 aa16.91■□□□□ 0.3
SHMT1-207ENST00000580002 NFE4Q86UQ8 179 aa16.9■□□□□ 0.3
SHMT1-207ENST00000580002 TINCRA0A1B0GVN0 87 aa16.89■□□□□ 0.29
SHMT1-207ENST00000580002 ZNF22P17026 224 aaPredicted RBP16.89■□□□□ 0.29
SHMT1-207ENST00000580002 CCL25O15444 150 aa16.88■□□□□ 0.29
SHMT1-207ENST00000580002 PLNP26678 52 aa16.88■□□□□ 0.29
SHMT1-207ENST00000580002 XCL1P47992 114 aa16.88■□□□□ 0.29
SHMT1-207ENST00000580002 TMEM170BQ5T4T1 132 aa16.87■□□□□ 0.29
SHMT1-207ENST00000580002 FAM19A3Q7Z5A8 133 aa16.87■□□□□ 0.29
SHMT1-207ENST00000580002 CDKN2A-AS1Q9UH64 79 aa16.87■□□□□ 0.29
SHMT1-207ENST00000580002 C3orf84H3BNL1 204 aa16.86■□□□□ 0.29
SHMT1-207ENST00000580002 ANKRD39Q53RE8 183 aa16.86■□□□□ 0.29
SHMT1-207ENST00000580002 CHCHD10Q8WYQ3 142 aaPredicted RBP16.86■□□□□ 0.29
SHMT1-207ENST00000580002 GEMIN7Q9H840 131 aaKnown RBP16.86■□□□□ 0.29
SHMT1-207ENST00000580002 KMT2AQ03164 3969 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms