RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 CDIP1Q9H305 208 aa7.24□□□□□ -1.25
VPS53-220ENST00000576149 PDZD2O15018 2839 aa7.24□□□□□ -1.25
VPS53-220ENST00000576149 CCDC168Q8NDH2 2452 aa7.24□□□□□ -1.25
VPS53-220ENST00000576149 CHD6Q8TD26 2715 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 IGLV1-51P01701 117 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 GIG44P09565 113 aaPredicted RBP7.23□□□□□ -1.25
VPS53-220ENST00000576149 GAGE13Q4V321 117 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 TENM4Q6N022 2769 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 IGHV1-58A0A0C4DH39 117 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 A0A0J9YXY3 114 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 TEX48A0A1B0GUV7 120 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 UBE2D3P61077 147 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 UBE2D2P62837 147 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 RPL24P83731 157 aaKnown RBP7.23□□□□□ -1.25
VPS53-220ENST00000576149 Q6ZTI0 123 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 PRO0461Q9UI25 63 aa7.23□□□□□ -1.25
VPS53-220ENST00000576149 TRAV8-3A0A0A6YYJ7 113 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 ADARB2-AS1A8MUL3 147 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 HILS1P60008 231 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 ZNF418Q8TF45 676 aaPredicted RBP7.22□□□□□ -1.25
VPS53-220ENST00000576149 C19orf73Q9NVV2 129 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 TRAV4A0A0B4J268 109 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 TRBV10-1A0A0K0K1A3 114 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 LINC01620Q4KN68 170 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 PRO1854Q9UHT4 67 aa7.22□□□□□ -1.25
VPS53-220ENST00000576149 K7EQD1 137 aa7.21□□□□□ -1.25
VPS53-220ENST00000576149 DAZ2Q13117 558 aaKnown RBP7.21□□□□□ -1.25
VPS53-220ENST00000576149 VSIG2Q96IQ7 327 aa7.21□□□□□ -1.25
VPS53-220ENST00000576149 LOC107984156A0A0G2JMH3 177 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 NDUFA7O95182 113 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 RPL36AP83881 106 aaKnown RBP7.21□□□□□ -1.26
VPS53-220ENST00000576149 SMAGPQ0VAQ4 97 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 SFTA2Q6UW10 78 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 MUSTN1Q8IVN3 82 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 ARL17AQ8IVW1 177 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 RPL36ALQ969Q0 106 aaKnown RBP7.21□□□□□ -1.26
VPS53-220ENST00000576149 WFDC10AQ9H1F0 79 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 WNK1Q9H4A3 2382 aa7.21□□□□□ -1.26
VPS53-220ENST00000576149 PLAC8L1A1L4L8 177 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 LYRM7Q5U5X0 104 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 LITAFQ99732 161 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 NOP10Q9NPE3 64 aaKnown RBP7.2□□□□□ -1.26
VPS53-220ENST00000576149 IGLV5-45A0A087WSX0 123 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 EIF4EBP3O60516 100 aaPredicted RBP7.2□□□□□ -1.26
VPS53-220ENST00000576149 SPINK8P0C7L1 97 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 DAZ4Q86SG3 579 aaKnown RBP7.2□□□□□ -1.26
VPS53-220ENST00000576149 C16orf74Q96GX8 76 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 SIGMAR1Q99720 223 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 DAZ3Q9NR90 486 aaKnown RBP7.2□□□□□ -1.26
VPS53-220ENST00000576149 NDUFA12Q9UI09 145 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 NF1P21359 2839 aa7.2□□□□□ -1.26
VPS53-220ENST00000576149 A0A0B4J2C4 111 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 RPL35AP18077 110 aaKnown RBP7.19□□□□□ -1.26
VPS53-220ENST00000576149 PSMB2P49721 201 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 ETDBQ3ZM63 59 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 SH2D6Q7Z4S9 175 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 CSNK1G2-AS1Q8NCQ2 148 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 LINC00694P0DN24 101 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 NTM-AS1Q6ZSK4 140 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 C1QTNF4Q9BXJ3 329 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 CDKN2A-AS1Q9UH64 79 aa7.19□□□□□ -1.26
VPS53-220ENST00000576149 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.18□□□□□ -1.26
VPS53-220ENST00000576149 IGHV3-33P01772 117 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 ZFAND6Q6FIF0 208 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.18□□□□□ -1.26
VPS53-220ENST00000576149 ACANP16112 2415 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 TRBV20-1A0A075B6N2 111 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 TCL1BO95988 128 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 LINC00336Q6ZUF6 198 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 SBSPONQ8IVN8 264 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 OVOL2Q9BRP0 275 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 SPANXDQ9BXN6 97 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 SPANXCQ9NY87 97 aa7.18□□□□□ -1.26
VPS53-220ENST00000576149 GAGE12JA6NER3 117 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 B5MCH6 92 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 SMCPP49901 116 aaPredicted RBP7.17□□□□□ -1.26
VPS53-220ENST00000576149 COX6A2Q02221 97 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 GAGE4Q13068 117 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 ADAMTSL4-AS1Q5T5F5 129 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 LCE2DQ5TA82 110 aaPredicted RBP7.17□□□□□ -1.26
VPS53-220ENST00000576149 FAM19A3Q7Z5A8 133 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 GAGE7O76087 117 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 GAGE12FP0CL80 117 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 GAGE12GP0CL81 117 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 GAGE12IP0CL82 117 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 HERVK_113P63121 156 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 LINC00242Q5T6M2 205 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 TMEM101Q96IK0 257 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 SMR3AQ99954 134 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 ERG28Q9UKR5 140 aa7.17□□□□□ -1.26
VPS53-220ENST00000576149 TRGV2A0A075B6R0 118 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 J3QR89 54 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 GTSF1LQ9H1H1 148 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 TRBV6-4A0A1B0GX49 114 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 PRSS2P07478 247 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 SCGB1C2P0DMR2 95 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 KRTAP10-3P60369 221 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 MIAQ16674 131 aa7.16□□□□□ -1.26
VPS53-220ENST00000576149 IGLV5-39A0A0G2JS06 123 aa7.15□□□□□ -1.26
VPS53-220ENST00000576149 NDUFA1O15239 70 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms