RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 ZNF25P17030 456 aaPredicted RBP5.74□□□□□ -1.49
NUP88-211ENST00000575976 ORMDL2Q53FV1 153 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 LCE2AQ5TA79 106 aaPredicted RBP5.74□□□□□ -1.49
NUP88-211ENST00000575976 CLPSL2Q6UWE3 100 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 FA2HQ7L5A8 372 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 LINC00269Q8N2A0 174 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 OR5A1Q8NGJ0 315 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 TMEM101Q96IK0 257 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 PRR34Q9NV39 138 aa5.74□□□□□ -1.49
NUP88-211ENST00000575976 TRAV8-3A0A0A6YYJ7 113 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 CRPP02741 224 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 LINC00614P0C842 121 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 REG3AQ06141 175 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 Q0VG73 95 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 DGAT2L7PQ6IED9 249 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 C2orf66Q6UXQ4 117 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 Q6ZRN7 208 aaPredicted RBP5.73□□□□□ -1.49
NUP88-211ENST00000575976 NFE4Q86UQ8 179 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 TIMM21Q9BVV7 248 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 CDC42SE2Q9NRR3 84 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 CYSLTR1Q9Y271 337 aa5.73□□□□□ -1.49
NUP88-211ENST00000575976 CHTOPQ9Y3Y2 248 aaKnown RBP5.73□□□□□ -1.49
NUP88-211ENST00000575976 CSDC2Q9Y534 153 aaKnown RBP5.73□□□□□ -1.49
NUP88-211ENST00000575976 DNAH6Q9C0G6 4158 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 IGKV3OR2-268A0A0C4DH90 116 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 RAB5BP61020 215 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 SMAGPQ0VAQ4 97 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 RNASE13Q5GAN3 156 aaKnown RBP5.72□□□□□ -1.49
NUP88-211ENST00000575976 Q6ZUT4 128 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 ZNF664Q8N3J9 261 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 FAM104AQ969W3 186 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 OPRPNQ99935 248 aaPredicted RBP5.72□□□□□ -1.49
NUP88-211ENST00000575976 AP5S1Q9NUS5 200 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 KMT2AQ03164 3969 aa5.72□□□□□ -1.49
NUP88-211ENST00000575976 ABCA13Q86UQ4 5058 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 IGKV2D-24A0A075B6R9 120 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 G0S2P27469 103 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 TNP2Q05952 138 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 MIAQ16674 131 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 BAGE3Q86Y29 109 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 TOMM6Q96B49 74 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 SPANXA1Q9NS26 97 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 PYGO1Q9Y3Y4 419 aa5.71□□□□□ -1.5
NUP88-211ENST00000575976 HECTD4Q9Y4D8 3996 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 IGLV10-54A0A075B6I4 117 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 IGLV4-3A0A075B6K6 122 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 A0A096LNJ9 63 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 PRSS29PA6NIE9 313 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 IGIPA6NJ69 53 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 MRPS36P82909 103 aaKnown RBP5.7□□□□□ -1.5
NUP88-211ENST00000575976 PMCHL1Q16048 86 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 KRTAP26-1Q6PEX3 210 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 MAPKAPK5-AS1Q8N8E1 139 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 CHCHD1Q96BP2 118 aaKnown RBP5.7□□□□□ -1.5
NUP88-211ENST00000575976 RMI2Q96E14 147 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 C1orf43Q9BWL3 253 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 TM2D2Q9BX73 214 aa5.7□□□□□ -1.5
NUP88-211ENST00000575976 TRAV8-4A0A0B4J246 113 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 LINC00959A0A1B0GUT2 108 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 PSCAO43653 123 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BKO60814 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BJP06899 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BOP23527 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BBP33778 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BDP58876 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 LINC00310P59036 64 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BCP62807 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST2H2BEQ16778 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.69□□□□□ -1.5
NUP88-211ENST00000575976 LINC00336Q6ZUF6 198 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BHQ93079 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 SCGB3A1Q96QR1 104 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BNQ99877 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 HIST1H2BMQ99879 126 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 COX11Q9Y6N1 276 aa5.69□□□□□ -1.5
NUP88-211ENST00000575976 DNAH2Q9P225 4427 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 LINC01549A6NIU2 74 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 NUPR1O60356 82 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 HSBP1O75506 76 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 SERF1AO75920 110 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 SCGB1D1O95968 90 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 HBDP02042 147 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 SS18Q15532 418 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 ZC2HC1BQ5TFG8 222 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 ERASQ7Z444 233 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 TMEM141Q96I45 108 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 TIMM17AQ99595 171 aa5.68□□□□□ -1.5
NUP88-211ENST00000575976 A0A087WTM6 91 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 TRAV13-1A0A0B4J241 112 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 LRCOL1A6NCL2 159 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 GAGE12HA6NDE8 117 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 IFITM10A6NMD0 228 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 C1orf196B1AJZ1 125 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 CCL25O15444 150 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 NPSP0C0P6 89 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 WFDC2Q14508 124 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 PDZD11Q5EBL8 140 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 PET117Q6UWS5 81 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 Q6ZN92 141 aa5.67□□□□□ -1.5
NUP88-211ENST00000575976 TEX43Q6ZNM6 134 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms