RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 WFDC9Q8NEX5 89 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 C7orf33Q8WU49 177 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 VSIG2Q96IQ7 327 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 TMEM14CQ9P0S9 112 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 NBEAL2Q6ZNJ1 2754 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 DNAH9Q9NYC9 4486 aa4.85□□□□□ -1.63
VPS53-217ENST00000575100 F8W1H4 67 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 MT-ND6P03923 174 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 P0DMU3 169 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 FAM231AP0DMU4 169 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 FAM231CP0DMU5 169 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 HLA-DMBP28068 263 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 TAS2R45P59539 299 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 EBLN2Q6P2I7 272 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 SMIM29Q86T20 159 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 BPIFA4PQ86YQ2 179 aa4.84□□□□□ -1.63
VPS53-217ENST00000575100 TRBV20-1A0A075B6N2 111 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 TMEM262E9PQX1 116 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 K7EIL1 84 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 FHL2Q14192 279 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 ELOBQ15370 118 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 ADIRFQ15847 76 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 C3orf22Q8N5N4 141 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 RNF182Q8N6D2 247 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 LAMTOR3Q9UHA4 124 aa4.84□□□□□ -1.64
VPS53-217ENST00000575100 IZUMO1RA6ND01 250 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 C11orf94C9JXX5 98 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 M0R3E3 92 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 DEFB1P60022 68 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 SPATA45Q537H7 98 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 AMTNQ6UX39 209 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 C10orf126Q8N4M7 172 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 KRTAP4-9Q9BYQ8 210 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 TMEM167BQ9NRX6 74 aa4.83□□□□□ -1.64
VPS53-217ENST00000575100 A8MUN3 132 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 LST1O00453 97 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 SOCS3O14543 225 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 SRP19P09132 144 aaKnown RBP4.82□□□□□ -1.64
VPS53-217ENST00000575100 CYB561D1Q8N8Q1 229 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 LINC00479Q96M42 142 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 ST20Q9HBF5 79 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 MANBALQ9NQG1 85 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 OTORQ9NRC9 128 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 A0A0J9YXY3 114 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 TMEM258P61165 79 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 BVES-AS1Q5T3Y7 98 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 C9orf153Q5TBE3 101 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 ATP6V0E2Q8NHE4 81 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 DCANP1Q8TF63 244 aa4.82□□□□□ -1.64
VPS53-217ENST00000575100 COL7A1Q02388 2944 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 TRBV20OR9-2A0A075B6H5 130 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 UQCRQO14949 82 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 CXCL1P09341 107 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 DEFB114Q30KQ6 69 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 LINC00526Q96FQ7 95 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 B9D2Q9BPU9 175 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 ZNF492Q9P255 531 aa4.81□□□□□ -1.64
VPS53-217ENST00000575100 H3BRM9 83 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 LTAP01374 205 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 KRTAP10-11P60412 298 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 SEC11AP67812 179 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 PDE6HQ13956 83 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 RPL36ALQ969Q0 106 aaKnown RBP4.8□□□□□ -1.64
VPS53-217ENST00000575100 TM2D3Q9BRN9 247 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 C11orf68Q9H3H3 251 aaKnown RBP4.8□□□□□ -1.64
VPS53-217ENST00000575100 SND1-IT1Q9HBX3 110 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 DYNC2H1Q8NCM8 4307 aaKnown RBP4.8□□□□□ -1.64
VPS53-217ENST00000575100 SLC25A5P05141 298 aaKnown RBP4.8□□□□□ -1.64
VPS53-217ENST00000575100 RRN3P1Q2M238 152 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 PRR15Q8IV56 129 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 SLC35B3Q9H1N7 401 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 EPDR1Q9UM22 224 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 ARL2-SNX15V9GYD0 113 aa4.8□□□□□ -1.64
VPS53-217ENST00000575100 TENM3Q9P273 2699 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 IGKV2-40A0A087WW87 121 aaPredicted RBP4.79□□□□□ -1.64
VPS53-217ENST00000575100 IGKV2D-40P01614 121 aaPredicted RBP4.79□□□□□ -1.64
VPS53-217ENST00000575100 IGLV1-51P01701 117 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 IGLV2-11P01706 119 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 TCRAP04437 139 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 ZNF688P0C7X2 276 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 GDF5OSQ5U4N7 250 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 Q8N1X5 172 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 DYNLRB2Q8TF09 96 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 BRK1Q8WUW1 75 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 C20orf78Q9BR46 151 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 SPCS1Q9Y6A9 102 aa4.79□□□□□ -1.64
VPS53-217ENST00000575100 TRBV24-1A0A075B6N3 115 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 MORN3Q6PF18 240 aaPredicted RBP4.78□□□□□ -1.64
VPS53-217ENST00000575100 SLC25A34Q6PIV7 304 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 LYPD1Q8N2G4 141 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 OR10AG1Q8NH19 301 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 VGLL1Q99990 258 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 CHAC1Q9BUX1 264 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 KRTAP4-2Q9BYR5 136 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 IMUPQ9GZP8 106 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 ZNF727A8MUV8 499 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 M0R2P5 195 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 COX7A2LO14548 114 aa4.78□□□□□ -1.64
VPS53-217ENST00000575100 PSMG4Q5JS54 123 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms