RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 RPL32P62910 135 aaKnown RBP7.14□□□□□ -1.27
VPS53-206ENST00000570359 SPINK8P0C7L1 97 aa7.13□□□□□ -1.27
VPS53-206ENST00000570359 TM2D2Q9BX73 214 aa7.13□□□□□ -1.27
VPS53-206ENST00000570359 RHODO00212 210 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 RS1O15537 224 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 SLC25A29Q8N8R3 303 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 TMEM263Q8WUH6 116 aaKnown RBP7.12□□□□□ -1.27
VPS53-206ENST00000570359 CHCHD7Q9BUK0 85 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 J3QQQ9 107 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 CRLF1O75462 422 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 LINC00694P0DN24 101 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 ZNF22P17026 224 aaPredicted RBP7.12□□□□□ -1.27
VPS53-206ENST00000570359 ATP6V0E2Q8NHE4 81 aa7.12□□□□□ -1.27
VPS53-206ENST00000570359 A0A096LPF7 62 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 TRGV4A0A0C4DH28 118 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 H7C2G1 150 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 C19orf73Q9NVV2 129 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 STAB1Q9NY15 2570 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 TRAV13-1A0A0B4J241 112 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 A0A0U1RRA0 63 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 C12orf74Q32Q52 190 aa7.11□□□□□ -1.27
VPS53-206ENST00000570359 MAST4O15021 2626 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 K7EQD1 137 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 WFDC2Q14508 124 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 TAL2Q16559 108 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 TRBV7-3A0A075B6L6 115 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 RPL36AP83881 106 aaKnown RBP7.1□□□□□ -1.27
VPS53-206ENST00000570359 BEAN1Q3B7T3 259 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 PAPPA-AS1Q5QFB9 102 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.1□□□□□ -1.27
VPS53-206ENST00000570359 RPL36ALQ969Q0 106 aaKnown RBP7.1□□□□□ -1.27
VPS53-206ENST00000570359 PGPEP1Q9NXJ5 209 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 PRO0461Q9UI25 63 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 UBE2D4Q9Y2X8 147 aa7.1□□□□□ -1.27
VPS53-206ENST00000570359 NDUFA11Q86Y39 141 aa7.09□□□□□ -1.27
VPS53-206ENST00000570359 FAM104AQ969W3 186 aa7.09□□□□□ -1.27
VPS53-206ENST00000570359 ZNF625Q96I27 306 aaPredicted RBP7.09□□□□□ -1.27
VPS53-206ENST00000570359 ERG28Q9UKR5 140 aa7.09□□□□□ -1.27
VPS53-206ENST00000570359 TMEM223A0PJW6 202 aa7.09□□□□□ -1.27
VPS53-206ENST00000570359 IGLL5B9A064 214 aa7.09□□□□□ -1.27
VPS53-206ENST00000570359 TIMM21Q9BVV7 248 aa7.09□□□□□ -1.27
VPS53-206ENST00000570359 DEFB135Q30KP9 77 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 LOC107984156A0A0G2JMH3 177 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 A0A0J9YY99 117 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 LINC01549A6NIU2 74 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 PRSS2P07478 247 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 ARL17AQ8IVW1 177 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 DAND5Q8N907 189 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 C16orf74Q96GX8 76 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 PLAC8L1A1L4L8 177 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 IGHV3-30-3P0DP02 117 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 ETDBQ3ZM63 59 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 NTM-AS1Q6ZSK4 140 aa7.08□□□□□ -1.28
VPS53-206ENST00000570359 UBE2L6O14933 153 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 GAGE6Q13070 117 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 TRAV4A0A0B4J268 109 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 COX6A2Q02221 97 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 NFE4Q86UQ8 179 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 C1QTNF4Q9BXJ3 329 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 CDIP1Q9H305 208 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 CDKN2A-AS1Q9UH64 79 aa7.07□□□□□ -1.28
VPS53-206ENST00000570359 H3BMG7 143 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 SH2D6Q7Z4S9 175 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 CSNK1G2-AS1Q8NCQ2 148 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 IL17DQ8TAD2 202 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 A0A1B0GWB2 263 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 LEPROTO15243 131 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 FOXI1Q12951 378 aa7.06□□□□□ -1.28
VPS53-206ENST00000570359 HTN3P15516 51 aa7.05□□□□□ -1.28
VPS53-206ENST00000570359 C10orf126Q8N4M7 172 aa7.05□□□□□ -1.28
VPS53-206ENST00000570359 DNAJC30Q96LL9 226 aa7.05□□□□□ -1.28
VPS53-206ENST00000570359 AMELXQ99217 191 aa7.05□□□□□ -1.28
VPS53-206ENST00000570359 SPANXA1Q9NS26 97 aa7.05□□□□□ -1.28
VPS53-206ENST00000570359 CLPSL2Q6UWE3 100 aa7.05□□□□□ -1.28
VPS53-206ENST00000570359 CMC4P56277 68 aaPredicted RBP7.04□□□□□ -1.28
VPS53-206ENST00000570359 CHCHD5Q9BSY4 110 aa7.04□□□□□ -1.28
VPS53-206ENST00000570359 NDUFA12Q9UI09 145 aa7.04□□□□□ -1.28
VPS53-206ENST00000570359 PYGO1Q9Y3Y4 419 aa7.04□□□□□ -1.28
VPS53-206ENST00000570359 NOTCH1P46531 2555 aa7.04□□□□□ -1.28
VPS53-206ENST00000570359 PKD1L1Q8TDX9 2849 aa7.04□□□□□ -1.28
VPS53-206ENST00000570359 A4D1N5 150 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 UBE2D3P61077 147 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 UBE2D2P62837 147 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 MRPS36P82909 103 aaKnown RBP7.03□□□□□ -1.28
VPS53-206ENST00000570359 DAZ2Q13117 558 aaKnown RBP7.03□□□□□ -1.28
VPS53-206ENST00000570359 MUSTN1Q8IVN3 82 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 FAM110AQ9BQ89 295 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 PSMB2P49721 201 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 Q1RN00 199 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 PIK3CD-AS1Q5SR53 167 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 EDA2RQ9HAV5 297 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 A0A0J9YXY3 114 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 IGHV3-30P01768 117 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 IGHV3-30-5P0DP03 117 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 INSL3P51460 131 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 UBE2D1P51668 147 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 RNF183Q96D59 192 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 TMEM243Q9BU79 118 aa7.03□□□□□ -1.28
VPS53-206ENST00000570359 C11orf68Q9H3H3 251 aaKnown RBP7.03□□□□□ -1.28
VPS53-206ENST00000570359 TOMM7Q9P0U1 55 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms