RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RHOHQ15669 191 aa9.8□□□□□ -0.84
CLK3-215ENST00000564353 WFDC11Q8NEX6 87 aa9.8□□□□□ -0.84
CLK3-215ENST00000564353 LINC00467Q9BRT7 94 aa9.8□□□□□ -0.84
CLK3-215ENST00000564353 IGHV3-30-3P0DP02 117 aa9.79□□□□□ -0.84
CLK3-215ENST00000564353 TTC32Q5I0X7 151 aa9.79□□□□□ -0.84
CLK3-215ENST00000564353 CFAP126Q5VTH2 177 aa9.79□□□□□ -0.84
CLK3-215ENST00000564353 DEFB113Q30KQ7 82 aa9.79□□□□□ -0.84
CLK3-215ENST00000564353 WFDC10AQ9H1F0 79 aa9.79□□□□□ -0.84
CLK3-215ENST00000564353 TMEM89A2RUT3 159 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 SMIM9A6NGZ8 99 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 M0R2P5 195 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 ZNF625Q96I27 306 aaPredicted RBP9.78□□□□□ -0.84
CLK3-215ENST00000564353 FSHBP01225 129 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 GAGE2BQ13066 116 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 GAGE2EQ4V326 116 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 TIMM21Q9BVV7 248 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 GAGE2DQ9UEU5 116 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 LEPROTO15243 131 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 PRO1854Q9UHT4 67 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 NBEAL2Q6ZNJ1 2754 aa9.78□□□□□ -0.84
CLK3-215ENST00000564353 TRGV1A0A0A0MS02 117 aa9.77□□□□□ -0.85
CLK3-215ENST00000564353 PLA2G2AP14555 144 aa9.77□□□□□ -0.85
CLK3-215ENST00000564353 DEFB114Q30KQ6 69 aa9.77□□□□□ -0.85
CLK3-215ENST00000564353 ADAMTSL4-AS1Q5T5F5 129 aa9.77□□□□□ -0.85
CLK3-215ENST00000564353 A0A0J9YXY3 114 aa9.77□□□□□ -0.85
CLK3-215ENST00000564353 ZNF415Q09FC8 603 aa9.76□□□□□ -0.85
CLK3-215ENST00000564353 CHCHD7Q9BUK0 85 aa9.76□□□□□ -0.85
CLK3-215ENST00000564353 PEMTQ9UBM1 199 aa9.76□□□□□ -0.85
CLK3-215ENST00000564353 FN1P02751 2386 aaKnown RBP9.76□□□□□ -0.85
CLK3-215ENST00000564353 IFITM1P13164 125 aa9.76□□□□□ -0.85
CLK3-215ENST00000564353 TRAV4A0A0B4J268 109 aa9.75□□□□□ -0.85
CLK3-215ENST00000564353 UBE2D3P61077 147 aa9.75□□□□□ -0.85
CLK3-215ENST00000564353 UBE2D2P62837 147 aa9.75□□□□□ -0.85
CLK3-215ENST00000564353 ODF3L2Q3SX64 289 aa9.75□□□□□ -0.85
CLK3-215ENST00000564353 C11orf72Q8NBR9 251 aa9.75□□□□□ -0.85
CLK3-215ENST00000564353 LINC00694P0DN24 101 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.74□□□□□ -0.85
CLK3-215ENST00000564353 A8MWV9 139 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 STHQ8IWL8 128 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 C4orf3Q8WVX3 66 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 CARD19Q96LW7 228 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 NDUFA12Q9UI09 145 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 UBE2D4Q9Y2X8 147 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 NOTCH2Q04721 2471 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 C9JAW5 83 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 Q6ZTI0 123 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 ESM1Q9NQ30 184 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 CDKN2A-AS1Q9UH64 79 aa9.74□□□□□ -0.85
CLK3-215ENST00000564353 CRLF1O75462 422 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 INSP01308 110 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 DGAT2L7PQ6IED9 249 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 TRAV13-1A0A0B4J241 112 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 DNAJC9-AS1A6NH13 148 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 COX6A2Q02221 97 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 RNF152Q8N8N0 203 aa9.73□□□□□ -0.85
CLK3-215ENST00000564353 PDZD2O15018 2839 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 SNCGO76070 127 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 IGHV3-33P01772 117 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 RPL35AP18077 110 aaKnown RBP9.72□□□□□ -0.85
CLK3-215ENST00000564353 TMEM263Q8WUH6 116 aaKnown RBP9.72□□□□□ -0.85
CLK3-215ENST00000564353 CITED2Q99967 270 aaPredicted RBP9.72□□□□□ -0.85
CLK3-215ENST00000564353 IGKV3OR2-268A0A0C4DH90 116 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 KRTAP1-3Q8IUG1 177 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 C1orf158Q8N1D5 194 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 ANKRD29Q8N6D5 301 aa9.72□□□□□ -0.85
CLK3-215ENST00000564353 MRPS36P82909 103 aaKnown RBP9.71□□□□□ -0.86
CLK3-215ENST00000564353 PPDPFLQ8WWR9 84 aa9.7□□□□□ -0.86
CLK3-215ENST00000564353 IGHV1-58A0A0C4DH39 117 aa9.7□□□□□ -0.86
CLK3-215ENST00000564353 FAM19A5Q7Z5A7 132 aaPredicted RBP9.7□□□□□ -0.86
CLK3-215ENST00000564353 NOP10Q9NPE3 64 aaKnown RBP9.7□□□□□ -0.86
CLK3-215ENST00000564353 GCN1Q92616 2671 aaKnown RBP9.7□□□□□ -0.86
CLK3-215ENST00000564353 LOC100131303A0A0U1RQF7 123 aa9.69□□□□□ -0.86
CLK3-215ENST00000564353 CCL24O00175 119 aa9.69□□□□□ -0.86
CLK3-215ENST00000564353 WIPF1O43516 503 aa9.69□□□□□ -0.86
CLK3-215ENST00000564353 ATP6V0E2Q8NHE4 81 aa9.69□□□□□ -0.86
CLK3-215ENST00000564353 LITAFQ99732 161 aa9.69□□□□□ -0.86
CLK3-215ENST00000564353 VSIG2Q96IQ7 327 aa9.69□□□□□ -0.86
CLK3-215ENST00000564353 TRIAP1O43715 76 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 SLC25A20O43772 301 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 PYGO1Q9Y3Y4 419 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 HECTD1Q9ULT8 2610 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 Q8N2B8 174 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 CLEC2BQ92478 149 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 DNAJC30Q96LL9 226 aa9.68□□□□□ -0.86
CLK3-215ENST00000564353 UNC79Q9P2D8 2635 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 F5H768 121 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 TEN1Q86WV5 123 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 TMEM126AQ9H061 195 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 EDA2RQ9HAV5 297 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 NTM-AS1Q6ZSK4 140 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 TMEM101Q96IK0 257 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 CHCHD5Q9BSY4 110 aa9.66□□□□□ -0.86
CLK3-215ENST00000564353 KMT2BQ9UMN6 2715 aaPredicted RBP9.66□□□□□ -0.86
CLK3-215ENST00000564353 TINCRA0A1B0GVN0 87 aa9.65□□□□□ -0.86
CLK3-215ENST00000564353 LYRM7Q5U5X0 104 aa9.65□□□□□ -0.86
CLK3-215ENST00000564353 FASNP49327 2511 aaKnown RBP9.65□□□□□ -0.86
CLK3-215ENST00000564353 VWFP04275 2813 aa9.65□□□□□ -0.86
CLK3-215ENST00000564353 RS1O15537 224 aa9.65□□□□□ -0.86
CLK3-215ENST00000564353 NTN5Q8WTR8 489 aaPredicted RBP9.65□□□□□ -0.86
CLK3-215ENST00000564353 Q9H8V8 135 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms