RNA–Protein interactions for RNA: ENST00000563688.5

SCAPER-208, Transcript of S-phase cyclin A associated protein in the ER, human

TSL 2

Gene SCAPER, Length 549 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCAPER-208	ENST00000563688	USH2A	O75445	5202 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	HCG22	E2RYF7	251 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SIX6	O95475	246 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	PPP1R17	O96001	155 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	CFD	P00746	253 aa	Predicted RBP	0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	RBM3	P98179	157 aa	Known RBP	0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688		Q5VSD8	79 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	AQP10	Q96PS8	301 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	AMELX	Q99217	191 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	CYP4F30P	Q9H0H9	118 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	FXYD6	Q9H0Q3	95 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPCS1	Q9Y6A9	102 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	DNAH8	Q96JB1	4490 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPEG	Q15772	3267 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	TEP1	Q99973	2627 aa	Known RBP	0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	NEB	P20929	6669 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	HIVEP1	P15822	2718 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	SHANK2	Q9UPX8	1470 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	PKDREJ	Q9NTG1	2253 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	MKI67	P46013	3256 aa	Known RBP	0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	CELSR3	Q9NYQ7	3312 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	CDH23	Q9H251	3354 aa		0.02	□□□□□ -2.41
SCAPER-208	ENST00000563688	BRCA2	P51587	3418 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	MYO18B	Q8IUG5	2567 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	HECTD1	Q9ULT8	2610 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	FOCAD	Q5VW36	1801 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PATJ	Q8NI35	1801 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	DOCK2	Q92608	1830 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	COL12A1	Q99715	3063 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	CREBBP	Q92793	2442 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TRAV13-2	A0A0B4J235	113 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	FAM25A	B3EWG3	89 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	FAM25C	B3EWG5	89 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	FAM25G	B3EWG6	89 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TPPP2	P59282	170 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	SELENOW	P63302	87 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	WHAMMP3	Q1A5X7	153 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	SMIM4	Q8WVI0	70 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	ARL11	Q969Q4	196 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688		R4GMQ9	66 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPTBN4	Q9H254	2564 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	COL6A5	A8TX70	2615 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	NSD1	Q96L73	2696 aa	Predicted RBP	0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	NBEAL2	Q6ZNJ1	2754 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PKD1L1	Q8TDX9	2849 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PXDN	Q92626	1479 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TRIO	O75962	3097 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	ASPM	Q8IZT6	3477 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	EP300	Q09472	2414 aa	Predicted RBP	0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	PTPN13	Q12923	2485 aa		0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	COL6A3	P12111	3177 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	SRCAP	Q6ZRS2	3230 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	VCAN	P13611	3396 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	LOC285095	A0A1B0GVY8	99 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	SSSCA1	O60232	199 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	PCNT	O95613	3336 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	COX8A	P10176	69 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPRR2B	P35325	72 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	UTRN	P46939	3433 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	DCD	P81605	110 aa	Known RBP	0	□□□□□ -2.41
SCAPER-208	ENST00000563688	COX17	Q14061	63 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	FLNC	Q14315	2725 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	KRTAP6-1	Q3LI64	71 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	PIGY	Q3MUY2	71 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	NHSL1	Q5SYE7	1610 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	C10orf128	Q5T292	105 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	C12orf73	Q69YU5	71 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	SETX	Q7Z333	2677 aa	Known RBP	0	□□□□□ -2.41
SCAPER-208	ENST00000563688	BCL9L	Q86UU0	1499 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	USMG5	Q96IX5	58 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	QRICH2	Q9H0J4	1663 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	SCN3B	Q9NY72	215 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	PRO0255	Q9UI72	69 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	ZNF236	Q9UL36	1845 aa		0	□□□□□ -2.41
SCAPER-208	ENST00000563688	GOLGB1	Q14789	3259 aa	Known RBP	-0	□□□□□ -2.41
SCAPER-208	ENST00000563688	UNC80	Q8N2C7	3258 aa		-0	□□□□□ -2.41
SCAPER-208	ENST00000563688	EYS	Q5T1H1	3165 aa		-0	□□□□□ -2.41
SCAPER-208	ENST00000563688	WDFY4	Q6ZS81	3184 aa		-0	□□□□□ -2.41
SCAPER-208	ENST00000563688	CHD6	Q8TD26	2715 aa		-0	□□□□□ -2.41
SCAPER-208	ENST00000563688	NBEAL1	Q6ZS30	2694 aa		-0	□□□□□ -2.41
SCAPER-208	ENST00000563688	WNK3	Q9BYP7	1800 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	DCHS1	Q96JQ0	3298 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	EP400	Q96L91	3159 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	LAMA2	P24043	3122 aa	Known RBP	-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	LAMA1	P25391	3075 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	ZNF609	O15014	1411 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	NAIP	Q13075	1403 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	NSD3	Q9BZ95	1437 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TENM4	Q6N022	2769 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	EPG5	Q9HCE0	2579 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	IFNG	P01579	166 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	APOC3	P02656	99 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPRR2D	P22532	72 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	SPRR2A	P35326	72 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	CCL18	P55774	89 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	SARNP	P82979	210 aa	Known RBP	-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	WFDC2	Q14508	124 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	ALKAL2	Q6UX46	152 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	COX6B2	Q6YFQ2	88 aa		-0.01	□□□□□ -2.41
SCAPER-208	ENST00000563688	TSLP	Q969D9	159 aa		-0.01	□□□□□ -2.41

Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms