RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 NUP210Q8TEM1 1887 aaPredicted RBP1.16□□□□□ -2.22
VRK1-202ENST00000553683 CDC42BPAQ5VT25 1732 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 DOPEY2Q9Y3R5 2298 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 IGLV10-54A0A075B6I4 117 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 TRBV7-1A0A0A6YYK4 115 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 IGHV3-43A0A0B4J1X8 118 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 IGHV1-24A0A0C4DH33 117 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 C10orf142B7Z368 130 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 IGLV1-51P01701 117 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 SAA1P0DJI8 122 aaPredicted RBP1.16□□□□□ -2.22
VRK1-202ENST00000553683 IGHV3-30-3P0DP02 117 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 CCL3P10147 92 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 NPPCP23582 126 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 PEBP1P30086 187 aaKnown RBP1.16□□□□□ -2.22
VRK1-202ENST00000553683 XCL1P47992 114 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 FXYD2P54710 66 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 DYNLT1P63172 113 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 KLKP1Q107X0 134 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 ZNF56Q15929 161 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 TMEM170BQ5T4T1 132 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 NCBP2-AS2Q69YL0 99 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 CYP2G1PQ6ZSU1 146 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 MIR17HGQ75NE6 70 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 BAGE3Q86Y29 109 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 BAGE2Q86Y30 109 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 PDPNQ86YL7 162 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 FAM223AQ8IWN6 122 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 Q8IYB0 196 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 LINC00269Q8N2A0 174 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 RPRMLQ8N4K4 120 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 PFN4Q8NHR9 129 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 SMIM4Q8WVI0 70 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 CLEC2BQ92478 149 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 GABARAPL1Q9H0R8 117 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 XAGE1AQ9HD64 81 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 SIPA1L1O43166 1804 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 MUC2Q02817 5179 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 KMT2EQ8IZD2 1858 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 ZNF638Q14966 1978 aaKnown RBP1.16□□□□□ -2.22
VRK1-202ENST00000553683 OTOFQ9HC10 1997 aa1.16□□□□□ -2.22
VRK1-202ENST00000553683 MYMXA0A1B0GTQ4 84 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 FAM223BA6NKX1 122 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 NDUFC1O43677 76 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 NPYP01303 97 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 PIPP12273 146 aaPredicted RBP1.15□□□□□ -2.23
VRK1-202ENST00000553683 GCHFRP30047 84 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 CKS2P33552 79 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 RPL27AP46776 148 aaKnown RBP1.15□□□□□ -2.23
VRK1-202ENST00000553683 ROMO1P60602 79 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 ESRGQ1W209 222 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 ZNF791Q3KP31 576 aaPredicted RBP1.15□□□□□ -2.23
VRK1-202ENST00000553683 FAM229BQ4G0N7 80 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 MRPL51Q4U2R6 128 aaKnown RBP1.15□□□□□ -2.23
VRK1-202ENST00000553683 VMO1Q7Z5L0 202 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 FAM19A2Q8N3H0 131 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 PPP1R1CQ8WVI7 109 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 FAM103A1Q9BTL3 118 aaKnown RBP1.15□□□□□ -2.23
VRK1-202ENST00000553683 KRTAP4-1Q9BYQ7 146 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 TTTY13Q9BZ97 58 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 NMES1Q9C002 83 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 PROK2Q9HC23 129 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 NDUFA12Q9UI09 145 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 FER1L6Q2WGJ9 1857 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 TMEM131Q92545 1883 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 F8P00451 2351 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 CHD9Q3L8U1 2897 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 RYR2Q92736 4967 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 CCDC88CQ9P219 2028 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 PARP14Q460N5 1801 aa1.15□□□□□ -2.23
VRK1-202ENST00000553683 GPR98Q8WXG9 6306 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 CSMD2Q7Z408 3487 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 CD163L1Q9NR16 1453 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 PTPRQQ9UMZ3 2332 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 PRRC2BQ5JSZ5 2229 aaKnown RBP1.14□□□□□ -2.23
VRK1-202ENST00000553683 RTTNQ86VV8 2226 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 AKAP9Q99996 3911 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 TRBV7-3A0A075B6L6 115 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 IGKV2D-26A0A0A0MRZ7 120 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 IGHV3-21A0A0B4J1V1 117 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 TRAV3A0A0B4J244 114 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 IQCF6A8MYZ5 107 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 E7EUB6 86 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 J3QLW9 94 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 ZNF22P17026 224 aaPredicted RBP1.14□□□□□ -2.23
VRK1-202ENST00000553683 SUPT4H1P63272 117 aaKnown RBP1.14□□□□□ -2.23
VRK1-202ENST00000553683 S100A7L2Q5SY68 101 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 GDF5OSQ5U4N7 250 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 SLC48A1Q6P1K1 146 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 ZCCHC23Q6ZST2 131 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 C6orf201Q7Z4U5 140 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 NDUFA11Q86Y39 141 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 Q8N814 137 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 SMCR5Q8TEV8 140 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 CHCHD1Q96BP2 118 aaKnown RBP1.14□□□□□ -2.23
VRK1-202ENST00000553683 TMEM141Q96I45 108 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 Q96M85 177 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 CYP4F30PQ9H0H9 118 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 CMC2Q9NRP2 79 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 PHLDA3Q9Y5J5 127 aa1.14□□□□□ -2.23
VRK1-202ENST00000553683 ARL2-SNX15V9GYD0 113 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms