RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 TAL2Q16559 108 aa18.59■□□□□ 0.57
CCDC88C-205ENST00000553403 DGAT2L7PQ6IED9 249 aa18.59■□□□□ 0.57
CCDC88C-205ENST00000553403 MIFP14174 115 aa18.58■□□□□ 0.57
CCDC88C-205ENST00000553403 NOTCH3Q9UM47 2321 aa18.58■□□□□ 0.56
CCDC88C-205ENST00000553403 TINCRA0A1B0GVN0 87 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 FAM222AQ5U5X8 452 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 IGHV4-28A0A0C4DH34 117 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 ZNF815PA8K554 130 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 OXLD1Q5BKU9 147 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 RNF183Q96D59 192 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 TMEM243Q9BU79 118 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 COX11Q9Y6N1 276 aa18.57■□□□□ 0.56
CCDC88C-205ENST00000553403 A6NDN8 102 aa18.56■□□□□ 0.56
CCDC88C-205ENST00000553403 H7C423 109 aa18.56■□□□□ 0.56
CCDC88C-205ENST00000553403 RNASE13Q5GAN3 156 aaKnown RBP18.56■□□□□ 0.56
CCDC88C-205ENST00000553403 TAX1BP3O14907 124 aa18.55■□□□□ 0.56
CCDC88C-205ENST00000553403 LEPROTO15243 131 aa18.55■□□□□ 0.56
CCDC88C-205ENST00000553403 EGFEM1PQ0D2K5 195 aa18.55■□□□□ 0.56
CCDC88C-205ENST00000553403 Q8NAQ8 132 aa18.54■□□□□ 0.56
CCDC88C-205ENST00000553403 UBE2D1P51668 147 aa18.54■□□□□ 0.56
CCDC88C-205ENST00000553403 NBEAL1Q6ZS30 2694 aa18.53■□□□□ 0.56
CCDC88C-205ENST00000553403 VWFP04275 2813 aa18.53■□□□□ 0.56
CCDC88C-205ENST00000553403 KRTAP10-11P60412 298 aa18.53■□□□□ 0.56
CCDC88C-205ENST00000553403 J3QQQ9 107 aa18.52■□□□□ 0.56
CCDC88C-205ENST00000553403 CEND1Q8N111 149 aa18.52■□□□□ 0.56
CCDC88C-205ENST00000553403 PLEKHB2Q96CS7 222 aa18.52■□□□□ 0.56
CCDC88C-205ENST00000553403 TM2D2Q9BX73 214 aa18.52■□□□□ 0.56
CCDC88C-205ENST00000553403 PRO0255Q9UI72 69 aa18.52■□□□□ 0.56
CCDC88C-205ENST00000553403 A8MZ25 164 aa18.51■□□□□ 0.55
CCDC88C-205ENST00000553403 UBE2L6O14933 153 aa18.51■□□□□ 0.55
CCDC88C-205ENST00000553403 GCSHP23434 173 aa18.51■□□□□ 0.55
CCDC88C-205ENST00000553403 LGALS3P17931 250 aaKnown RBP18.5■□□□□ 0.55
CCDC88C-205ENST00000553403 TIRAPP58753 221 aa18.5■□□□□ 0.55
CCDC88C-205ENST00000553403 TSPEAR-AS2P59090 65 aa18.5■□□□□ 0.55
CCDC88C-205ENST00000553403 OR5A1Q8NGJ0 315 aa18.5■□□□□ 0.55
CCDC88C-205ENST00000553403 FAM19A3Q7Z5A8 133 aa18.49■□□□□ 0.55
CCDC88C-205ENST00000553403 TRBV6-8A0A0A6YYG3 113 aa18.48■□□□□ 0.55
CCDC88C-205ENST00000553403 H3BRM9 83 aa18.48■□□□□ 0.55
CCDC88C-205ENST00000553403 AMMECR1LQ6DCA0 310 aa18.48■□□□□ 0.55
CCDC88C-205ENST00000553403 SCGB1D4Q6XE38 83 aa18.48■□□□□ 0.55
CCDC88C-205ENST00000553403 HIST1H4GQ99525 98 aa18.48■□□□□ 0.55
CCDC88C-205ENST00000553403 CDC42SE2Q9NRR3 84 aa18.48■□□□□ 0.55
CCDC88C-205ENST00000553403 GYPEP15421 78 aa18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 DAD1P61803 113 aa18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 Q6ZVH6 145 aa18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 TMEM101Q96IK0 257 aa18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 GEMIN7Q9H840 131 aaKnown RBP18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 DEFB4AO15263 64 aa18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 FXYD2P54710 66 aa18.47■□□□□ 0.55
CCDC88C-205ENST00000553403 IGLV5-45A0A087WSX0 123 aa18.46■□□□□ 0.55
CCDC88C-205ENST00000553403 ATP6V0E2Q8NHE4 81 aa18.45■□□□□ 0.54
CCDC88C-205ENST00000553403 SPART-AS1P0CW21 52 aa18.44■□□□□ 0.54
CCDC88C-205ENST00000553403 LINC00469Q8N7U9 141 aa18.44■□□□□ 0.54
CCDC88C-205ENST00000553403 IGHV1-58A0A0C4DH39 117 aa18.44■□□□□ 0.54
CCDC88C-205ENST00000553403 PAX4O43316 350 aa18.44■□□□□ 0.54
CCDC88C-205ENST00000553403 PTTG1IPP53801 180 aa18.44■□□□□ 0.54
CCDC88C-205ENST00000553403 A0A0J9YY99 117 aa18.43■□□□□ 0.54
CCDC88C-205ENST00000553403 HERVK_113P63121 156 aa18.43■□□□□ 0.54
CCDC88C-205ENST00000553403 IGHV3-30-3P0DP02 117 aa18.42■□□□□ 0.54
CCDC88C-205ENST00000553403 CELA1Q9UNI1 258 aa18.42■□□□□ 0.54
CCDC88C-205ENST00000553403 IGHV3-64A0A075B6Q5 118 aa18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 ATP5G1P05496 136 aa18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 SPANXB1Q9NS25 103 aaPredicted RBP18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 TEX48A0A1B0GUV7 120 aa18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 SMIM13P0DJ93 91 aa18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 GAGE6Q13070 117 aa18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 LINC00242Q5T6M2 205 aa18.41■□□□□ 0.54
CCDC88C-205ENST00000553403 VSIG2Q96IQ7 327 aa18.4■□□□□ 0.54
CCDC88C-205ENST00000553403 K7EP13 123 aa18.39■□□□□ 0.53
CCDC88C-205ENST00000553403 C9orf118A6NHY6 69 aa18.38■□□□□ 0.53
CCDC88C-205ENST00000553403 CHCHD5Q9BSY4 110 aa18.38■□□□□ 0.53
CCDC88C-205ENST00000553403 CDKN2A-AS1Q9UH64 79 aa18.38■□□□□ 0.53
CCDC88C-205ENST00000553403 TRAV8-3A0A0A6YYJ7 113 aa18.38■□□□□ 0.53
CCDC88C-205ENST00000553403 SPINK8P0C7L1 97 aa18.37■□□□□ 0.53
CCDC88C-205ENST00000553403 COX6A2Q02221 97 aa18.37■□□□□ 0.53
CCDC88C-205ENST00000553403 SRSF9Q13242 221 aaKnown RBP eCLIP18.37■□□□□ 0.53
CCDC88C-205ENST00000553403 TRAV13-1A0A0B4J241 112 aa18.36■□□□□ 0.53
CCDC88C-205ENST00000553403 NHP2Q9NX24 153 aaKnown RBP18.35■□□□□ 0.53
CCDC88C-205ENST00000553403 TRRAPQ9Y4A5 3859 aa18.35■□□□□ 0.53
CCDC88C-205ENST00000553403 VAMP3Q15836 100 aa18.34■□□□□ 0.53
CCDC88C-205ENST00000553403 TRAV26-1A0A087WT03 109 aa18.33■□□□□ 0.52
CCDC88C-205ENST00000553403 G3V4G9 280 aa18.33■□□□□ 0.52
CCDC88C-205ENST00000553403 A0A1B0GWB2 263 aa18.32■□□□□ 0.52
CCDC88C-205ENST00000553403 UBE2V1Q13404 147 aa18.32■□□□□ 0.52
CCDC88C-205ENST00000553403 MGAM2Q2M2H8 2515 aa18.32■□□□□ 0.52
CCDC88C-205ENST00000553403 IGLV4-60A0A075B6I1 120 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 TMEM238LA0A1B0GVL6 79 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 A6NJY4 79 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 F5H768 121 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 C12orf74Q32Q52 190 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 SAMD5Q5TGI4 173 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 C10orf126Q8N4M7 172 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 RAB37Q96AX2 223 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 NDUFA12Q9UI09 145 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 PKD1L1Q8TDX9 2849 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 IGLV5-39A0A0G2JS06 123 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 ZFAND6Q6FIF0 208 aa18.31■□□□□ 0.52
CCDC88C-205ENST00000553403 A0A0J9YXY3 114 aa18.3■□□□□ 0.52
CCDC88C-205ENST00000553403 A0A1B0GUV1 79 aa18.29■□□□□ 0.52
CCDC88C-205ENST00000553403 IGHV3-30P01768 117 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms