RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 IGHV1-58A0A0C4DH39 117 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 A8MTW9 85 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 BBC3Q96PG8 261 aaPredicted RBP5.42□□□□□ -1.54
LIMA1-213ENST00000552720 NDUFA12Q9UI09 145 aa5.42□□□□□ -1.54
LIMA1-213ENST00000552720 TRIAP1O43715 76 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 NDUFA7O95182 113 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 SCGB1A1P11684 91 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 DYNLRB2Q8TF09 96 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 VSIG2Q96IQ7 327 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 GCN1Q92616 2671 aaKnown RBP5.41□□□□□ -1.54
LIMA1-213ENST00000552720 ITPR2Q14571 2701 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 CDKN2A-AS1Q9UH64 79 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 NBEAL2Q6ZNJ1 2754 aa5.41□□□□□ -1.54
LIMA1-213ENST00000552720 A0A1W2PRX2 142 aa5.4□□□□□ -1.54
LIMA1-213ENST00000552720 IGHV3-53P01767 116 aa5.4□□□□□ -1.54
LIMA1-213ENST00000552720 COX6A2Q02221 97 aa5.4□□□□□ -1.54
LIMA1-213ENST00000552720 DEFB114Q30KQ6 69 aa5.4□□□□□ -1.54
LIMA1-213ENST00000552720 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-213ENST00000552720 TINCRA0A1B0GVN0 87 aa5.4□□□□□ -1.55
LIMA1-213ENST00000552720 LINC00694P0DN24 101 aa5.4□□□□□ -1.55
LIMA1-213ENST00000552720 CRYBA4P53673 196 aa5.4□□□□□ -1.55
LIMA1-213ENST00000552720 ODF3L2Q3SX64 289 aa5.4□□□□□ -1.55
LIMA1-213ENST00000552720 NTN5Q8WTR8 489 aaPredicted RBP5.4□□□□□ -1.55
LIMA1-213ENST00000552720 PEMTQ9UBM1 199 aa5.4□□□□□ -1.55
LIMA1-213ENST00000552720 A0A0U1RRA0 63 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 C4orf3Q8WVX3 66 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 ZNF625Q96I27 306 aaPredicted RBP5.39□□□□□ -1.55
LIMA1-213ENST00000552720 Q96MF0 132 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 INSP01308 110 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 CKS1BP61024 79 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 LINC01620Q4KN68 170 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 C1orf158Q8N1D5 194 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 Q8N2B8 174 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 GEMIN7Q9H840 131 aaKnown RBP5.39□□□□□ -1.55
LIMA1-213ENST00000552720 SPANXA1Q9NS26 97 aa5.39□□□□□ -1.55
LIMA1-213ENST00000552720 TRGV1A0A0A0MS02 117 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 TEX49A0A1B0GTD5 131 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 RS1O15537 224 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 MIAQ16674 131 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 BEAN1Q3B7T3 259 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 CLEC2BQ92478 149 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 TMEM101Q96IK0 257 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 SPANXDQ9BXN6 97 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 SPANXCQ9NY87 97 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 PDZD2O15018 2839 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 VWFP04275 2813 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 ANK3Q12955 4377 aaKnown RBP5.38□□□□□ -1.55
LIMA1-213ENST00000552720 ZFAND6Q6FIF0 208 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 Q6ZTI0 123 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 MDFIQ99750 246 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 ICOSQ9Y6W8 199 aa5.38□□□□□ -1.55
LIMA1-213ENST00000552720 FN1P02751 2386 aaKnown RBP5.38□□□□□ -1.55
LIMA1-213ENST00000552720 TRBV30A0A0K0K1B3 111 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 ATXN8Q156A1 80 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 DEFB113Q30KQ7 82 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 DGAT2L7PQ6IED9 249 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 NTM-AS1Q6ZSK4 140 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 LINC00242Q5T6M2 205 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 KRTAP1-3Q8IUG1 177 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 STHQ8IWL8 128 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 WFDC10AQ9H1F0 79 aa5.37□□□□□ -1.55
LIMA1-213ENST00000552720 TRAV13-1A0A0B4J241 112 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 A0A1B0GV72 72 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 PIK3CD-AS1Q5SR53 167 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 DNAJC30Q96LL9 226 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 Q9H8V8 135 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 H7C423 109 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 PLA2G2AP14555 144 aa5.36□□□□□ -1.55
LIMA1-213ENST00000552720 RPL13AP40429 203 aaKnown RBP5.36□□□□□ -1.55
LIMA1-213ENST00000552720 TRBV10-2A0A0K0K1G8 114 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 GAGE12JA6NER3 117 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 NDUFA1O15239 70 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 CRLF1O75462 422 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 GAGE4Q13068 117 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 GAGE5Q13069 117 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 CITED2Q99967 270 aaPredicted RBP5.35□□□□□ -1.55
LIMA1-213ENST00000552720 ESM1Q9NQ30 184 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 IGLV5-45A0A087WSX0 123 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 LOC100131303A0A0U1RQF7 123 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 DNAJC9-AS1A6NH13 148 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 TIRAPP58753 221 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 SOSTDC1Q6X4U4 206 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 IL17DQ8TAD2 202 aa5.35□□□□□ -1.55
LIMA1-213ENST00000552720 SMIM1B2RUZ4 78 aa5.34□□□□□ -1.55
LIMA1-213ENST00000552720 HIST2H2BCQ6DN03 193 aa5.34□□□□□ -1.55
LIMA1-213ENST00000552720 C2orf82Q6UX34 121 aa5.34□□□□□ -1.55
LIMA1-213ENST00000552720 WFDC11Q8NEX6 87 aa5.34□□□□□ -1.55
LIMA1-213ENST00000552720 NOP10Q9NPE3 64 aaKnown RBP5.34□□□□□ -1.55
LIMA1-213ENST00000552720 TRAV26-1A0A087WT03 109 aa5.34□□□□□ -1.56
LIMA1-213ENST00000552720 IGLV5-39A0A0G2JS06 123 aa5.34□□□□□ -1.56
LIMA1-213ENST00000552720 K7EQD1 137 aa5.34□□□□□ -1.56
LIMA1-213ENST00000552720 CCL24O00175 119 aa5.34□□□□□ -1.56
LIMA1-213ENST00000552720 ZNF843Q8N446 348 aa5.34□□□□□ -1.56
LIMA1-213ENST00000552720 LINC00308Q8TCZ7 52 aa5.34□□□□□ -1.56
LIMA1-213ENST00000552720 TRAV4A0A0B4J268 109 aa5.33□□□□□ -1.56
LIMA1-213ENST00000552720 M0QXV9 152 aa5.33□□□□□ -1.56
LIMA1-213ENST00000552720 GIG44P09565 113 aaPredicted RBP5.33□□□□□ -1.56
LIMA1-213ENST00000552720 RPL36AP83881 106 aaKnown RBP5.33□□□□□ -1.56
LIMA1-213ENST00000552720 RPL36ALQ969Q0 106 aaKnown RBP5.33□□□□□ -1.56
LIMA1-213ENST00000552720 UBE2WQ96B02 151 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms