RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 HIST3H2BBQ8N257 126 aa10.93□□□□□ -0.66
PRPF40A-212ENST00000545856 WFDC10BQ8IUB3 73 aa10.92□□□□□ -0.66
PRPF40A-212ENST00000545856 ALMS1Q8TCU4 4167 aa10.92□□□□□ -0.66
PRPF40A-212ENST00000545856 SNRPEP62304 92 aaKnown RBP10.91□□□□□ -0.66
PRPF40A-212ENST00000545856 MPV17L2Q567V2 206 aa10.91□□□□□ -0.66
PRPF40A-212ENST00000545856 FAM19A2Q8N3H0 131 aa10.91□□□□□ -0.66
PRPF40A-212ENST00000545856 Q9H8V8 135 aa10.91□□□□□ -0.66
PRPF40A-212ENST00000545856 CDC42SE2Q9NRR3 84 aa10.91□□□□□ -0.66
PRPF40A-212ENST00000545856 AKR1D1P51857 326 aa10.9□□□□□ -0.66
PRPF40A-212ENST00000545856 PMCHL1Q16048 86 aa10.9□□□□□ -0.66
PRPF40A-212ENST00000545856 ZNF664Q8N3J9 261 aa10.9□□□□□ -0.66
PRPF40A-212ENST00000545856 IFI27L1Q96BM0 104 aa10.9□□□□□ -0.66
PRPF40A-212ENST00000545856 C2orf88Q9BSF0 95 aa10.9□□□□□ -0.66
PRPF40A-212ENST00000545856 TMA7Q9Y2S6 64 aaKnown RBP10.9□□□□□ -0.66
PRPF40A-212ENST00000545856 IGLV4-3A0A075B6K6 122 aa10.9□□□□□ -0.67
PRPF40A-212ENST00000545856 TEX43Q6ZNM6 134 aa10.9□□□□□ -0.67
PRPF40A-212ENST00000545856 DEFB104AQ8WTQ1 72 aa10.9□□□□□ -0.67
PRPF40A-212ENST00000545856 AMELXQ99217 191 aa10.9□□□□□ -0.67
PRPF40A-212ENST00000545856 LYSTQ99698 3801 aa10.9□□□□□ -0.67
PRPF40A-212ENST00000545856 TRAV12-1A0A0B4J245 112 aa10.89□□□□□ -0.67
PRPF40A-212ENST00000545856 SPATA12Q7Z6I5 190 aa10.89□□□□□ -0.67
PRPF40A-212ENST00000545856 LINC00476Q8WZB0 136 aa10.89□□□□□ -0.67
PRPF40A-212ENST00000545856 MAP1LC3CQ9BXW4 147 aa10.89□□□□□ -0.67
PRPF40A-212ENST00000545856 VCX2Q9H322 139 aa10.89□□□□□ -0.67
PRPF40A-212ENST00000545856 PRR34Q9NV39 138 aa10.89□□□□□ -0.67
PRPF40A-212ENST00000545856 TRAV8-4A0A0B4J246 113 aa10.88□□□□□ -0.67
PRPF40A-212ENST00000545856 SEC11AP67812 179 aa10.88□□□□□ -0.67
PRPF40A-212ENST00000545856 PMVKQ15126 192 aa10.88□□□□□ -0.67
PRPF40A-212ENST00000545856 MIAQ16674 131 aa10.88□□□□□ -0.67
PRPF40A-212ENST00000545856 HIST1H2BLQ99880 126 aa10.88□□□□□ -0.67
PRPF40A-212ENST00000545856 DNAH1Q9P2D7 4330 aa10.88□□□□□ -0.67
PRPF40A-212ENST00000545856 TRAV8-3A0A0A6YYJ7 113 aa10.87□□□□□ -0.67
PRPF40A-212ENST00000545856 CRPP02741 224 aa10.87□□□□□ -0.67
PRPF40A-212ENST00000545856 ANGP03950 147 aaKnown RBP10.87□□□□□ -0.67
PRPF40A-212ENST00000545856 Q8N976 141 aa10.87□□□□□ -0.67
PRPF40A-212ENST00000545856 DNAH6Q9C0G6 4158 aa10.86□□□□□ -0.67
PRPF40A-212ENST00000545856 IGLV4-60A0A075B6I1 120 aa10.86□□□□□ -0.67
PRPF40A-212ENST00000545856 IBA57-AS1B1ANH7 110 aa10.86□□□□□ -0.67
PRPF40A-212ENST00000545856 Q6ZUT4 128 aa10.86□□□□□ -0.67
PRPF40A-212ENST00000545856 FAM19A3Q7Z5A8 133 aa10.86□□□□□ -0.67
PRPF40A-212ENST00000545856 BAALCQ8WXS3 180 aa10.86□□□□□ -0.67
PRPF40A-212ENST00000545856 FABP4P15090 132 aa10.85□□□□□ -0.67
PRPF40A-212ENST00000545856 PET117Q6UWS5 81 aa10.85□□□□□ -0.67
PRPF40A-212ENST00000545856 FAM104AQ969W3 186 aa10.85□□□□□ -0.67
PRPF40A-212ENST00000545856 RMI2Q96E14 147 aa10.85□□□□□ -0.67
PRPF40A-212ENST00000545856 COX11Q9Y6N1 276 aa10.85□□□□□ -0.67
PRPF40A-212ENST00000545856 IFITM10A6NMD0 228 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 IGHV3-30P01768 117 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 IGHV3-33P01772 117 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 PRSS1P07477 247 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 IGHV3-30-3P0DP02 117 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 IGHV3-30-5P0DP03 117 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 REG3AQ06141 175 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 KLK12Q9UKR0 248 aa10.84□□□□□ -0.67
PRPF40A-212ENST00000545856 NBDYA0A0U1RRE5 68 aa10.83□□□□□ -0.68
PRPF40A-212ENST00000545856 LINC00173Q6ZV60 143 aa10.83□□□□□ -0.68
PRPF40A-212ENST00000545856 LINC00269Q8N2A0 174 aa10.83□□□□□ -0.68
PRPF40A-212ENST00000545856 CST9LQ9H4G1 147 aa10.83□□□□□ -0.68
PRPF40A-212ENST00000545856 C20orf202A1L168 122 aa10.82□□□□□ -0.68
PRPF40A-212ENST00000545856 SYS1-DBNDD2H3BUS1 97 aa10.82□□□□□ -0.68
PRPF40A-212ENST00000545856 SS18Q15532 418 aa10.82□□□□□ -0.68
PRPF40A-212ENST00000545856 NFE4Q86UQ8 179 aa10.82□□□□□ -0.68
PRPF40A-212ENST00000545856 UBE2D1P51668 147 aa10.81□□□□□ -0.68
PRPF40A-212ENST00000545856 LINC00959A0A1B0GUT2 108 aa10.8□□□□□ -0.68
PRPF40A-212ENST00000545856 PRSS29PA6NIE9 313 aa10.8□□□□□ -0.68
PRPF40A-212ENST00000545856 F8VRH5 84 aa10.8□□□□□ -0.68
PRPF40A-212ENST00000545856 LY6G6CO95867 125 aa10.8□□□□□ -0.68
PRPF40A-212ENST00000545856 HERVK_113P63121 156 aa10.8□□□□□ -0.68
PRPF40A-212ENST00000545856 OPRPNQ99935 248 aaPredicted RBP10.8□□□□□ -0.68
PRPF40A-212ENST00000545856 TINCRA0A1B0GVN0 87 aa10.79□□□□□ -0.68
PRPF40A-212ENST00000545856 C3orf79P0CE67 100 aa10.79□□□□□ -0.68
PRPF40A-212ENST00000545856 PLNP26678 52 aa10.79□□□□□ -0.68
PRPF40A-212ENST00000545856 UBE2WQ96B02 151 aa10.79□□□□□ -0.68
PRPF40A-212ENST00000545856 TM2D2Q9BX73 214 aa10.79□□□□□ -0.68
PRPF40A-212ENST00000545856 IGLC3P0DOY3 106 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 ODF1Q14990 250 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 LINC01545Q5VT33 79 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 ENHOQ6UWT2 76 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 LINC01561Q8N1V8 128 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 Q8N3U1 123 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 C1orf43Q9BWL3 253 aa10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 CHTOPQ9Y3Y2 248 aaKnown RBP10.78□□□□□ -0.68
PRPF40A-212ENST00000545856 LCE6AA0A183 80 aa10.77□□□□□ -0.68
PRPF40A-212ENST00000545856 KRTDAPP60985 99 aa10.77□□□□□ -0.68
PRPF40A-212ENST00000545856 CD164L2Q6UWJ8 174 aa10.77□□□□□ -0.68
PRPF40A-212ENST00000545856 Q6ZR54 194 aa10.77□□□□□ -0.68
PRPF40A-212ENST00000545856 TRAV13-1A0A0B4J241 112 aa10.77□□□□□ -0.69
PRPF40A-212ENST00000545856 IGLV5-45A0A087WSX0 123 aa10.76□□□□□ -0.69
PRPF40A-212ENST00000545856 RNASE13Q5GAN3 156 aaKnown RBP10.76□□□□□ -0.69
PRPF40A-212ENST00000545856 LINC00242Q5T6M2 205 aa10.76□□□□□ -0.69
PRPF40A-212ENST00000545856 OR10D4PQ8NGN7 298 aa10.76□□□□□ -0.69
PRPF40A-212ENST00000545856 GEMIN7Q9H840 131 aaKnown RBP10.76□□□□□ -0.69
PRPF40A-212ENST00000545856 DPM2O94777 84 aa10.75□□□□□ -0.69
PRPF40A-212ENST00000545856 CHCHD10Q8WYQ3 142 aaPredicted RBP10.75□□□□□ -0.69
PRPF40A-212ENST00000545856 CHAC1Q9BUX1 264 aa10.75□□□□□ -0.69
PRPF40A-212ENST00000545856 MRPL35Q9NZE8 188 aaKnown RBP10.75□□□□□ -0.69
PRPF40A-212ENST00000545856 IGLV4-69A0A075B6H9 119 aa10.74□□□□□ -0.69
PRPF40A-212ENST00000545856 IGHV3OR16-9A0A0B4J2B5 98 aa10.74□□□□□ -0.69
PRPF40A-212ENST00000545856 H3BRM9 83 aa10.74□□□□□ -0.69
PRPF40A-212ENST00000545856 KRTAP1-5Q9BYS1 174 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms