RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 TMEM86BQ8N661 226 aa9.09□□□□□ -0.95
RNF4-222ENST00000541204 SETXQ7Z333 2677 aaKnown RBP9.08□□□□□ -0.96
RNF4-222ENST00000541204 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.08□□□□□ -0.96
RNF4-222ENST00000541204 CCL24O00175 119 aa9.08□□□□□ -0.96
RNF4-222ENST00000541204 LITAFQ99732 161 aa9.08□□□□□ -0.96
RNF4-222ENST00000541204 ADAMTSL4-AS1Q5T5F5 129 aa9.08□□□□□ -0.96
RNF4-222ENST00000541204 LINC01587Q99440 93 aa9.08□□□□□ -0.96
RNF4-222ENST00000541204 XCL2Q9UBD3 114 aa9.08□□□□□ -0.96
RNF4-222ENST00000541204 NACAE9PAV3 2078 aa9.07□□□□□ -0.96
RNF4-222ENST00000541204 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.07□□□□□ -0.96
RNF4-222ENST00000541204 IGKV2-29A2NJV5 120 aaPredicted RBP9.07□□□□□ -0.96
RNF4-222ENST00000541204 NPC2P61916 151 aa9.07□□□□□ -0.96
RNF4-222ENST00000541204 HIVEP2P31629 2446 aa9.07□□□□□ -0.96
RNF4-222ENST00000541204 IGHV1-58A0A0C4DH39 117 aa9.07□□□□□ -0.96
RNF4-222ENST00000541204 LINC01006Q8NI28 216 aa9.07□□□□□ -0.96
RNF4-222ENST00000541204 GEMIN7Q9H840 131 aaKnown RBP9.07□□□□□ -0.96
RNF4-222ENST00000541204 EDA2RQ9HAV5 297 aa9.07□□□□□ -0.96
RNF4-222ENST00000541204 TRIAP1O43715 76 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 CHCHD7Q9BUK0 85 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 NDUFA12Q9UI09 145 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 IGHV3-38A0A0C4DH36 116 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 ATXN8Q156A1 80 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 ODF3L2Q3SX64 289 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 TEX29Q8N6K0 151 aa9.06□□□□□ -0.96
RNF4-222ENST00000541204 LINC01620Q4KN68 170 aa9.05□□□□□ -0.96
RNF4-222ENST00000541204 UBE2D4Q9Y2X8 147 aa9.05□□□□□ -0.96
RNF4-222ENST00000541204 NTN5Q8WTR8 489 aaPredicted RBP9.05□□□□□ -0.96
RNF4-222ENST00000541204 VSIG2Q96IQ7 327 aa9.05□□□□□ -0.96
RNF4-222ENST00000541204 LINC00467Q9BRT7 94 aa9.04□□□□□ -0.96
RNF4-222ENST00000541204 TRBV30A0A0K0K1B3 111 aa9.04□□□□□ -0.96
RNF4-222ENST00000541204 TINCRA0A1B0GVN0 87 aa9.04□□□□□ -0.96
RNF4-222ENST00000541204 TMEM262E9PQX1 116 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 M0QXV9 152 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 ZNF415Q09FC8 603 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 STHQ8IWL8 128 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 ANK3Q12955 4377 aaKnown RBP9.03□□□□□ -0.96
RNF4-222ENST00000541204 SPANXDQ9BXN6 97 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 WFDC10AQ9H1F0 79 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 SPANXCQ9NY87 97 aa9.03□□□□□ -0.96
RNF4-222ENST00000541204 TRAV26-1A0A087WT03 109 aa9.02□□□□□ -0.96
RNF4-222ENST00000541204 TEX49A0A1B0GTD5 131 aa9.02□□□□□ -0.96
RNF4-222ENST00000541204 MIAQ16674 131 aa9.02□□□□□ -0.96
RNF4-222ENST00000541204 SPANXA1Q9NS26 97 aa9.02□□□□□ -0.96
RNF4-222ENST00000541204 INSP01308 110 aa9.02□□□□□ -0.97
RNF4-222ENST00000541204 DAND5Q8N907 189 aa9.02□□□□□ -0.97
RNF4-222ENST00000541204 ICOSQ9Y6W8 199 aa9.02□□□□□ -0.97
RNF4-222ENST00000541204 A8MTW9 85 aa9.01□□□□□ -0.97
RNF4-222ENST00000541204 RNASE1P07998 156 aaKnown RBP9.01□□□□□ -0.97
RNF4-222ENST00000541204 C2CD3Q4AC94 2353 aa9.01□□□□□ -0.97
RNF4-222ENST00000541204 TRBV10-2A0A0K0K1G8 114 aa9.01□□□□□ -0.97
RNF4-222ENST00000541204 C11orf72Q8NBR9 251 aa9.01□□□□□ -0.97
RNF4-222ENST00000541204 CDKN2A-AS1Q9UH64 79 aa9.01□□□□□ -0.97
RNF4-222ENST00000541204 FN1P02751 2386 aaKnown RBP9□□□□□ -0.97
RNF4-222ENST00000541204 IGHV3-53P01767 116 aa9□□□□□ -0.97
RNF4-222ENST00000541204 ZFAND6Q6FIF0 208 aa9□□□□□ -0.97
RNF4-222ENST00000541204 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9□□□□□ -0.97
RNF4-222ENST00000541204 CLEC2BQ92478 149 aa9□□□□□ -0.97
RNF4-222ENST00000541204 OTOGQ6ZRI0 2925 aa8.99□□□□□ -0.97
RNF4-222ENST00000541204 PIK3CD-AS1Q5SR53 167 aa8.99□□□□□ -0.97
RNF4-222ENST00000541204 CLUHP3Q96NS8 147 aa8.99□□□□□ -0.97
RNF4-222ENST00000541204 H7C423 109 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 RPL35AP18077 110 aaKnown RBP8.98□□□□□ -0.97
RNF4-222ENST00000541204 C2orf82Q6UX34 121 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 RNF183Q96D59 192 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 COX6A2Q02221 97 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 C1orf158Q8N1D5 194 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 TMEM101Q96IK0 257 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 CITED1Q99966 193 aa8.98□□□□□ -0.97
RNF4-222ENST00000541204 TRGV1A0A0A0MS02 117 aa8.97□□□□□ -0.97
RNF4-222ENST00000541204 CRLF1O75462 422 aa8.97□□□□□ -0.97
RNF4-222ENST00000541204 COX6CP09669 75 aa8.97□□□□□ -0.97
RNF4-222ENST00000541204 RPL13AP40429 203 aaKnown RBP8.97□□□□□ -0.97
RNF4-222ENST00000541204 DGAT2L7PQ6IED9 249 aa8.97□□□□□ -0.97
RNF4-222ENST00000541204 UBE2WQ96B02 151 aa8.97□□□□□ -0.97
RNF4-222ENST00000541204 DNAJC30Q96LL9 226 aa8.97□□□□□ -0.97
RNF4-222ENST00000541204 TRAV4A0A0B4J268 109 aa8.96□□□□□ -0.97
RNF4-222ENST00000541204 HILS1P60008 231 aa8.96□□□□□ -0.97
RNF4-222ENST00000541204 BEAN1Q3B7T3 259 aa8.96□□□□□ -0.97
RNF4-222ENST00000541204 LINC01600Q96MT4 127 aa8.96□□□□□ -0.97
RNF4-222ENST00000541204 ANAPC13Q9BS18 74 aa8.96□□□□□ -0.97
RNF4-222ENST00000541204 VWFP04275 2813 aa8.96□□□□□ -0.98
RNF4-222ENST00000541204 TRAV8-4A0A0B4J246 113 aa8.96□□□□□ -0.98
RNF4-222ENST00000541204 TRAV25A0A0B4J276 109 aa8.96□□□□□ -0.98
RNF4-222ENST00000541204 RS1O15537 224 aa8.96□□□□□ -0.98
RNF4-222ENST00000541204 SNCGO76070 127 aa8.96□□□□□ -0.98
RNF4-222ENST00000541204 ZNF625Q96I27 306 aaPredicted RBP8.96□□□□□ -0.98
RNF4-222ENST00000541204 A0A0U1RRA0 63 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 NDUFA7O95182 113 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 C16orf95Q9H693 158 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 NDUFA1O15239 70 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 TIRAPP58753 221 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 IGLV5-45A0A087WSX0 123 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 TIMM17BO60830 172 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 LY6G6DO95868 133 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 LINC00694P0DN24 101 aa8.95□□□□□ -0.98
RNF4-222ENST00000541204 LST1O00453 97 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 Q6ZTI0 123 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 Q9H8V8 135 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 IFITM1P13164 125 aa8.94□□□□□ -0.98
RNF4-222ENST00000541204 GAGE2BQ13066 116 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms