RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 Q96MF0 132 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 ABCA2Q9BZC7 2435 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 ZNF469Q96JG9 3925 aaPredicted RBP6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV1-69P01742 117 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 COX7A1P24310 79 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.98□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV1-3A0A0C4DH29 117 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 C1orf195Q5TG92 126 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 TMEM243Q9BU79 118 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 C16orf95Q9H693 158 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 CELSR1Q9NYQ6 3014 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV4OR15-8A0A075B7B6 117 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 A0A087WW49 117 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 IGHV3-35A0A0C4DH35 117 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 FANCD2OSQ96PS1 177 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 NDUFA12Q9UI09 145 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 SERP1Q9Y6X1 66 aa6.97□□□□□ -1.29
CTNNA1-243ENST00000540387 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.97□□□□□ -1.291e-6■■■□□ 18.2
CTNNA1-243ENST00000540387 NXPH4O95158 308 aa6.96□□□□□ -1.29
CTNNA1-243ENST00000540387 VMO1Q7Z5L0 202 aa6.96□□□□□ -1.29
CTNNA1-243ENST00000540387 IGLV1-47P01700 117 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 IGF1P05019 195 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 MSMBP08118 114 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 LINC00315P59091 139 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 FAM222AQ5U5X8 452 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 C9orf47Q6ZRZ4 202 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 C16orf92Q96LL3 132 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 ITPR3Q14573 2671 aa6.96□□□□□ -1.3
CTNNA1-243ENST00000540387 IGLV11-55A0A075B6I3 123 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 B4DSR2 109 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 MYO9AB2RTY4 2548 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV3-66A0A0C4DH42 116 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 A0A0U1RQV1 116 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 CTSGP08311 255 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 SUMO4Q6EEV6 95 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 KIF25-AS1Q9Y6Z4 181 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 TLN2Q9Y4G6 2542 aa6.95□□□□□ -1.3
CTNNA1-243ENST00000540387 BUB1B-PAK6H3BSN5 160 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 DNAL4O96015 105 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 ACANP16112 2415 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 MUC4Q99102 2169 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 TEX15Q9BXT5 2789 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 TRBV27A0A0K0K1C4 114 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 FP248Q71RG6 208 aaPredicted RBP6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 Q8N2B8 174 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 LINC00846Q9NV44 126 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 UBE2D4Q9Y2X8 147 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 A8MZ25 164 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 CIRBPQ14011 172 aaKnown RBP6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 LINC01356Q8N9X3 169 aa6.94□□□□□ -1.3
CTNNA1-243ENST00000540387 FLNAP21333 2647 aaKnown RBP6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV3OR16-13A0A075B7E8 117 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV3-74A0A0B4J1X5 117 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV1-58A0A0C4DH39 117 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 C20orf197Q8N268 126 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 FAM218AQ96MZ4 157 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 AKAP9Q99996 3911 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 IGLV4-3A0A075B6K6 122 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 A0A0U1RRA0 63 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 CLPSL1A2RUU4 121 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 ODF3BA8MYP8 253 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 GNRH2O43555 120 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 GHRHP01286 108 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV4-31P0DP07 118 aa6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 RNASE3P12724 160 aaKnown RBP6.93□□□□□ -1.3
CTNNA1-243ENST00000540387 BAHCC1Q9P281 2608 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 TRAV21A0A0B4J279 112 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 F5H697 171 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 MED14OSP0DP75 135 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 NDPQ00604 133 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 BRK1Q8WUW1 75 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 MRPL53Q96EL3 112 aaKnown RBP6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 DPM3Q9P2X0 92 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 SMIM26A0A096LP01 95 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 RBMY1BA6NDE4 496 aaKnown RBP6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 RBMY1EA6NEQ0 496 aaKnown RBP6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHG2P01859 326 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 RBMY1DP0C7P1 496 aaKnown RBP6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 RBMY1A1P0DJD3 496 aaKnown RBP6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 RBMY1CP0DJD4 496 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 XCL1P47992 114 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 RBMY1FQ15415 496 aaKnown RBP6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 ZFAND2AQ8N6M9 145 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 Q9HAA7 133 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 XCL2Q9UBD3 114 aa6.92□□□□□ -1.3
CTNNA1-243ENST00000540387 ZFHX3Q15911 3703 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 A0A087WWL8 130 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 HILS1P60008 231 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 VSIG2Q96IQ7 327 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 C14orf132Q9NPU4 83 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 TIMM17BO60830 172 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 IGHV4-38-2P0DP08 117 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 C9orf129Q5T035 196 aaKnown RBP6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 BRD3OSQ6XYD6 125 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 RNF5Q99942 180 aa6.91□□□□□ -1.3
CTNNA1-243ENST00000540387 CR1P17927 2039 aa6.9□□□□□ -1.3
CTNNA1-243ENST00000540387 H7BZZ5 65 aa6.9□□□□□ -1.3
CTNNA1-243ENST00000540387 NBR2O15453 112 aa6.9□□□□□ -1.3
CTNNA1-243ENST00000540387 SAA4P35542 130 aa6.9□□□□□ -1.3
CTNNA1-243ENST00000540387 C20orf203Q8NBC4 194 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms