RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 RPL13AP40429 203 aaKnown RBP8.06□□□□□ -1.12
TRIM3-211ENST00000532542 FXYD2P54710 66 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 CKS1BP61024 79 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 MRPL23Q16540 153 aaKnown RBP8.06□□□□□ -1.12
TRIM3-211ENST00000532542 Q6ZVH6 145 aa8.06□□□□□ -1.12
TRIM3-211ENST00000532542 TINCRA0A1B0GVN0 87 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 FAM222AQ5U5X8 452 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 DCHS1Q96JQ0 3298 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 A0A1W2PPM0 123 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 TAX1BP3O14907 124 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 K7ERJ3 54 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 NPC2P61916 151 aa8.05□□□□□ -1.12
TRIM3-211ENST00000532542 ZNF625Q96I27 306 aaPredicted RBP8.05□□□□□ -1.12
TRIM3-211ENST00000532542 HRNRQ86YZ3 2850 aaPredicted RBP8.05□□□□□ -1.12
TRIM3-211ENST00000532542 IGHV1-58A0A0C4DH39 117 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 DEFB4AO15263 64 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 C2orf91Q6ZV80 131 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 C11orf72Q8NBR9 251 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 VSIG2Q96IQ7 327 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 A0A1B0GWB2 263 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 A8MTW9 85 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 H7C423 109 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 ZNF22P17026 224 aaPredicted RBP8.04□□□□□ -1.12
TRIM3-211ENST00000532542 MIFP14174 115 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 NFE4Q86UQ8 179 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 OR13C6PQ8NH95 151 aa8.04□□□□□ -1.12
TRIM3-211ENST00000532542 PRO1854Q9UHT4 67 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 K7EP34 96 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 IGHV3-30-3P0DP02 117 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 ICOSQ9Y6W8 199 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 TACC2O95359 2948 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 ANGP03950 147 aaKnown RBP8.03□□□□□ -1.12
TRIM3-211ENST00000532542 MAPKAPK5-AS1Q8N8E1 139 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 F8P00451 2351 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 UNC79Q9P2D8 2635 aa8.03□□□□□ -1.12
TRIM3-211ENST00000532542 TMEM223A0PJW6 202 aa8.02□□□□□ -1.13
TRIM3-211ENST00000532542 Q9H8V8 135 aa8.02□□□□□ -1.13
TRIM3-211ENST00000532542 UBE2D4Q9Y2X8 147 aa8.02□□□□□ -1.13
TRIM3-211ENST00000532542 EDA2RQ9HAV5 297 aa8.02□□□□□ -1.13
TRIM3-211ENST00000532542 HERV-K104P63124 156 aa8.02□□□□□ -1.13
TRIM3-211ENST00000532542 TM2D2Q9BX73 214 aa8.02□□□□□ -1.13
TRIM3-211ENST00000532542 UBE2D3P61077 147 aa8.01□□□□□ -1.13
TRIM3-211ENST00000532542 UBE2D2P62837 147 aa8.01□□□□□ -1.13
TRIM3-211ENST00000532542 MRPS36P82909 103 aaKnown RBP8.01□□□□□ -1.13
TRIM3-211ENST00000532542 C11orf68Q9H3H3 251 aaKnown RBP8.01□□□□□ -1.13
TRIM3-211ENST00000532542 TRAV8-3A0A0A6YYJ7 113 aa8.01□□□□□ -1.13
TRIM3-211ENST00000532542 IFITM1P13164 125 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 ZFHX4Q86UP3 3567 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 TRBV20-1A0A075B6N2 111 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 TRBV6-8A0A0A6YYG3 113 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 TIRAPP58753 221 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 Q6ZSN1 163 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 IGLL5B9A064 214 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 XCL1P47992 114 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 OVOL2Q9BRP0 275 aa8□□□□□ -1.13
TRIM3-211ENST00000532542 CDKN2A-AS1Q9UH64 79 aa7.99□□□□□ -1.13
TRIM3-211ENST00000532542 ZNF575Q86XF7 245 aa7.99□□□□□ -1.13
TRIM3-211ENST00000532542 IGHV4-28A0A0C4DH34 117 aa7.99□□□□□ -1.13
TRIM3-211ENST00000532542 DNAL4O96015 105 aa7.99□□□□□ -1.13
TRIM3-211ENST00000532542 CLPSL2Q6UWE3 100 aa7.99□□□□□ -1.13
TRIM3-211ENST00000532542 TEX15Q9BXT5 2789 aa7.99□□□□□ -1.13
TRIM3-211ENST00000532542 C5orf38Q86SI9 138 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 CHCHD7Q9BUK0 85 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 GTSF1LQ9H1H1 148 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 IGLV4-69A0A075B6H9 119 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 MUSTN1Q8IVN3 82 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 A4D1N5 150 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 CCL25O15444 150 aa7.98□□□□□ -1.13
TRIM3-211ENST00000532542 TRAV26-1A0A087WT03 109 aa7.97□□□□□ -1.13
TRIM3-211ENST00000532542 IGHV4-30-4P0DP06 118 aa7.97□□□□□ -1.13
TRIM3-211ENST00000532542 LOC100131303A0A0U1RQF7 123 aa7.97□□□□□ -1.13
TRIM3-211ENST00000532542 ATXN8Q156A1 80 aa7.97□□□□□ -1.13
TRIM3-211ENST00000532542 SPANXB1Q9NS25 103 aaPredicted RBP7.97□□□□□ -1.13
TRIM3-211ENST00000532542 A0A0J9YXY3 114 aa7.97□□□□□ -1.13
TRIM3-211ENST00000532542 COX7B2Q8TF08 81 aa7.97□□□□□ -1.13
TRIM3-211ENST00000532542 CFC1BP0CG36 223 aa7.96□□□□□ -1.13
TRIM3-211ENST00000532542 CFC1P0CG37 223 aa7.96□□□□□ -1.13
TRIM3-211ENST00000532542 PFN2P35080 140 aa7.96□□□□□ -1.13
TRIM3-211ENST00000532542 AMELXQ99217 191 aa7.96□□□□□ -1.13
TRIM3-211ENST00000532542 F8W1H4 67 aa7.96□□□□□ -1.14
TRIM3-211ENST00000532542 C10orf126Q8N4M7 172 aa7.96□□□□□ -1.14
TRIM3-211ENST00000532542 UTP20O75691 2785 aaKnown RBP7.96□□□□□ -1.14
TRIM3-211ENST00000532542 K7EP13 123 aa7.96□□□□□ -1.14
TRIM3-211ENST00000532542 UBE2D1P51668 147 aa7.96□□□□□ -1.14
TRIM3-211ENST00000532542 MUC4Q99102 2169 aa7.95□□□□□ -1.14
TRIM3-211ENST00000532542 OXLD1Q5BKU9 147 aa7.95□□□□□ -1.14
TRIM3-211ENST00000532542 FHL2Q14192 279 aa7.95□□□□□ -1.14
TRIM3-211ENST00000532542 CSDC2Q9Y534 153 aaKnown RBP7.95□□□□□ -1.14
TRIM3-211ENST00000532542 CITED1Q99966 193 aa7.95□□□□□ -1.14
TRIM3-211ENST00000532542 COX7A2LO14548 114 aa7.94□□□□□ -1.14
TRIM3-211ENST00000532542 H3BMG7 143 aa7.94□□□□□ -1.14
TRIM3-211ENST00000532542 CDC42SE2Q9NRR3 84 aa7.94□□□□□ -1.14
TRIM3-211ENST00000532542 UBR5O95071 2799 aaPredicted RBP7.93□□□□□ -1.14
TRIM3-211ENST00000532542 MIAQ16674 131 aa7.93□□□□□ -1.14
TRIM3-211ENST00000532542 MRAPQ8TCY5 172 aa7.93□□□□□ -1.14
TRIM3-211ENST00000532542 ZFAND6Q6FIF0 208 aa7.93□□□□□ -1.14
TRIM3-211ENST00000532542 RELNP78509 3460 aa7.93□□□□□ -1.14
TRIM3-211ENST00000532542 TRAV13-2A0A0B4J235 113 aa7.92□□□□□ -1.14
TRIM3-211ENST00000532542 OCIAD2Q56VL3 154 aa7.92□□□□□ -1.14
TRIM3-211ENST00000532542 UBE2WQ96B02 151 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms