RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-208ENST00000529813 COX8CQ7Z4L0 72 aa3.14□□□□□ -1.91
USP47-208ENST00000529813 UPK3BQ9BT76 320 aa3.14□□□□□ -1.91
USP47-208ENST00000529813 SMKR1H3BMG3 65 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 SNAI2O43623 268 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 HLA-DQA1P01909 254 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 IGLC6P0CF74 106 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 MED14OSP0DP75 135 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 ESDP10768 282 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 CKS1BP61024 79 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 RASL11AQ6T310 242 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 NFE4Q86UQ8 179 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 GTSF1Q8WW33 167 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 RPL39LQ96EH5 51 aaKnown RBP3.13□□□□□ -1.91
USP47-208ENST00000529813 TRBV25-1A0A075B6N4 114 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 TRBV10-1A0A0K0K1A3 114 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 A0A1B0GUT8 65 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 BAALCQ8WXS3 180 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 MRPL18Q9H0U6 180 aaKnown RBP3.13□□□□□ -1.91
USP47-208ENST00000529813 GAGE10A6NGK3 116 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 UBE2D3P61077 147 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 UBE2D2P62837 147 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 RIGQ13278 110 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 ODF1Q14990 250 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 AMN1Q8IY45 258 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 ANAPC16Q96DE5 110 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 SSBP4Q9BWG4 385 aaPredicted RBP3.13□□□□□ -1.91
USP47-208ENST00000529813 PGPEP1Q9NXJ5 209 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 SS18L2Q9UHA2 77 aa3.13□□□□□ -1.91
USP47-208ENST00000529813 VPS13DQ5THJ4 4388 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 TRBV6-8A0A0A6YYG3 113 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 FAM231BA6NCW3 169 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 KRTAP10-2P60368 255 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 RPL24P83731 157 aaKnown RBP3.12□□□□□ -1.91
USP47-208ENST00000529813 LINC01620Q4KN68 170 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 LINC01556Q5JQF7 62 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 BVES-AS1Q5T3Y7 98 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 TSKUQ8WUA8 353 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 PTH2Q96A98 100 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 C1orf43Q9BWL3 253 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 DNAH1Q9P2D7 4330 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.12□□□□□ -1.91
USP47-208ENST00000529813 IGKV2-29A2NJV5 120 aaPredicted RBP3.12□□□□□ -1.91
USP47-208ENST00000529813 M0QY20 66 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 FCER1GP30273 86 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 HERV-K104P63124 156 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 PIK3CD-AS1Q5SR53 167 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 DGAT2L7PQ6IED9 249 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 UFSP1Q6NVU6 142 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 NUP35Q8NFH5 326 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 DPH3Q96FX2 82 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 TMEM243Q9BU79 118 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 TM2D2Q9BX73 214 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 OSTCQ9NRP0 149 aa3.12□□□□□ -1.91
USP47-208ENST00000529813 BIRC6Q9NR09 4857 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 TRAV8-3A0A0A6YYJ7 113 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 IGHV1-24A0A0C4DH33 117 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 SDHAF1A6NFY7 115 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 LINC00269Q8N2A0 174 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 GATD1Q8NB37 220 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 SIGMAR1Q99720 223 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 NAT8BQ9UHF3 227 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 A0A087WTM6 91 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 IGLV5-52A0A0A0MRZ9 124 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 hDV102S1A0JD36 115 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 GAS8-AS1O95177 125 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 CKS2P33552 79 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 RMI2Q96E14 147 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 ST20Q9HBF5 79 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 KIF25-AS1Q9Y6Z4 181 aa3.11□□□□□ -1.91
USP47-208ENST00000529813 IBA57-AS1B1ANH7 110 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 H3BUT2 72 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 APCSP02743 223 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 NTM-AS1Q6ZSK4 140 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 FAM231DQ6ZW35 169 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 GEMIN7Q9H840 131 aaKnown RBP3.1□□□□□ -1.91
USP47-208ENST00000529813 V9GYV3 84 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 LOC389332A0A1B0GUA5 103 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 HSD52Q0P140 79 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 RAB37Q96AX2 223 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.1□□□□□ -1.91
USP47-208ENST00000529813 SMR3BP02814 79 aaPredicted RBP3.1□□□□□ -1.91
USP47-208ENST00000529813 TIRAPP58753 221 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 Q0VG73 95 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 WFDC2Q14508 124 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 RNASE13Q5GAN3 156 aaKnown RBP3.1□□□□□ -1.91
USP47-208ENST00000529813 LINC00528Q8N1L1 170 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 DNAH10Q8IVF4 4471 aa3.1□□□□□ -1.91
USP47-208ENST00000529813 GAGE12HA6NDE8 117 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 H0Y8G0 127 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 PMCHL1Q16048 86 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 TMEM97Q5BJF2 176 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 GTF2H5Q6ZYL4 71 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 TMEM101Q96IK0 257 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 FRAS1Q86XX4 4008 aa3.09□□□□□ -1.91
USP47-208ENST00000529813 IGLV4-60A0A075B6I1 120 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 A0A1B0GVY2 172 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 LINC00694P0DN24 101 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 REG3AQ06141 175 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 CT83Q5H943 113 aa3.09□□□□□ -1.92
USP47-208ENST00000529813 BOD1L2Q8IYS8 172 aa3.09□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms