RNA–Protein interactions for RNA: ENST00000527158.2

SNRNP35-204, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 35, humanhuman

TSL 1 (best)

Gene SNRNP35, Length 2,161 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP35-204ENST00000527158 NFE4Q86UQ8 179 aa11.57□□□□□ -0.56
SNRNP35-204ENST00000527158 K7EQD1 137 aa11.57□□□□□ -0.56
SNRNP35-204ENST00000527158 SCGB1A1P11684 91 aa11.56□□□□□ -0.56
SNRNP35-204ENST00000527158 RPL36AP83881 106 aaKnown RBP11.56□□□□□ -0.56
SNRNP35-204ENST00000527158 ZNRF2Q8NHG8 242 aa11.56□□□□□ -0.56
SNRNP35-204ENST00000527158 RPL36ALQ969Q0 106 aaKnown RBP11.56□□□□□ -0.56
SNRNP35-204ENST00000527158 X6R8D5 127 aa11.56□□□□□ -0.56
SNRNP35-204ENST00000527158 H3BMG7 143 aa11.55□□□□□ -0.56
SNRNP35-204ENST00000527158 PGPEP1Q9NXJ5 209 aa11.55□□□□□ -0.56
SNRNP35-204ENST00000527158 A0A0J9YY99 117 aa11.55□□□□□ -0.56
SNRNP35-204ENST00000527158 SLC25A29Q8N8R3 303 aa11.55□□□□□ -0.56
SNRNP35-204ENST00000527158 ATP6V0E2Q8NHE4 81 aa11.55□□□□□ -0.56
SNRNP35-204ENST00000527158 TRGV4A0A0C4DH28 118 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 WFDC2Q14508 124 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 DEFB135Q30KP9 77 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 OXLD1Q5BKU9 147 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 PRO0461Q9UI25 63 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 IGHV3-38A0A0C4DH36 116 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 IGHV4-30-4P0DP06 118 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 TMEM170BQ5T4T1 132 aa11.54□□□□□ -0.56
SNRNP35-204ENST00000527158 LGALS3P17931 250 aaKnown RBP11.53□□□□□ -0.56
SNRNP35-204ENST00000527158 CRYBA4P53673 196 aa11.53□□□□□ -0.56
SNRNP35-204ENST00000527158 PLEKHB2Q96CS7 222 aa11.53□□□□□ -0.56
SNRNP35-204ENST00000527158 TRBV6-4A0A1B0GX49 114 aa11.52□□□□□ -0.56
SNRNP35-204ENST00000527158 PYGO1Q9Y3Y4 419 aa11.52□□□□□ -0.56
SNRNP35-204ENST00000527158 TRBV20-1A0A075B6N2 111 aa11.52□□□□□ -0.57
SNRNP35-204ENST00000527158 LEPROTO15243 131 aa11.52□□□□□ -0.57
SNRNP35-204ENST00000527158 DEFB130BP0DP73 79 aa11.52□□□□□ -0.57
SNRNP35-204ENST00000527158 DEFB130AP0DP74 79 aa11.52□□□□□ -0.57
SNRNP35-204ENST00000527158 DAZ4Q86SG3 579 aaKnown RBP11.52□□□□□ -0.57
SNRNP35-204ENST00000527158 DAZ3Q9NR90 486 aaKnown RBP11.52□□□□□ -0.57
SNRNP35-204ENST00000527158 J3QQQ9 107 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 SIGMAR1Q99720 223 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 CHCHD7Q9BUK0 85 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 GAGE12JA6NER3 117 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 UBE2D3P61077 147 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 UBE2D2P62837 147 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 GAGE4Q13068 117 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 GAGE5Q13069 117 aa11.51□□□□□ -0.57
SNRNP35-204ENST00000527158 TSPAN13O95857 204 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 LINC00612Q8N6U2 182 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 VCX2Q9H322 139 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 IGHV3-30P01768 117 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 IGHV3-30-5P0DP03 117 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 FHL2Q14192 279 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 ETDBQ3ZM63 59 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 OPRPNQ99935 248 aaPredicted RBP11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 SPATA25Q9BR10 227 aa11.5□□□□□ -0.57
SNRNP35-204ENST00000527158 IGLV4-3A0A075B6K6 122 aa11.49□□□□□ -0.57
SNRNP35-204ENST00000527158 TMEM223A0PJW6 202 aa11.49□□□□□ -0.57
SNRNP35-204ENST00000527158 LYRM9A8MSI8 78 aa11.49□□□□□ -0.57
SNRNP35-204ENST00000527158 SPANXA1Q9NS26 97 aa11.49□□□□□ -0.57
SNRNP35-204ENST00000527158 FBN1P35555 2871 aaKnown RBP11.49□□□□□ -0.57
SNRNP35-204ENST00000527158 GAGE12HA6NDE8 117 aa11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 IGKV2-29A2NJV5 120 aaPredicted RBP11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 TMEM238C9JI98 176 aa11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 MIFP14174 115 aa11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 KRTAP10-11P60412 298 aa11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 EGFEM1PQ0D2K5 195 aa11.48□□□□□ -0.57
SNRNP35-204ENST00000527158 TRRAPQ9Y4A5 3859 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 FAM222AQ5U5X8 452 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 C10orf126Q8N4M7 172 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 RNF183Q96D59 192 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 AMELXQ99217 191 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 UBE2D4Q9Y2X8 147 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 APOMO95445 188 aa11.47□□□□□ -0.57
SNRNP35-204ENST00000527158 IGHV4-28A0A0C4DH34 117 aa11.46□□□□□ -0.57
SNRNP35-204ENST00000527158 LOC107984156A0A0G2JMH3 177 aa11.46□□□□□ -0.57
SNRNP35-204ENST00000527158 ARL17AQ8IVW1 177 aa11.46□□□□□ -0.57
SNRNP35-204ENST00000527158 PRO1854Q9UHT4 67 aa11.46□□□□□ -0.57
SNRNP35-204ENST00000527158 TSPEAR-AS2P59090 65 aa11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 CEMP1Q6PRD7 247 aaPredicted RBP11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 SH2D6Q7Z4S9 175 aa11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 CFC1BP0CG36 223 aa11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 CFC1P0CG37 223 aa11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 ZNF22P17026 224 aaPredicted RBP11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 PSMB2P49721 201 aa11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 GTSF1LQ9H1H1 148 aa11.45□□□□□ -0.58
SNRNP35-204ENST00000527158 LOC100131303A0A0U1RQF7 123 aa11.44□□□□□ -0.58
SNRNP35-204ENST00000527158 DEFB4AO15263 64 aa11.44□□□□□ -0.58
SNRNP35-204ENST00000527158 DGAT2L7PQ6IED9 249 aa11.44□□□□□ -0.58
SNRNP35-204ENST00000527158 A0A0B4J2C4 111 aa11.44□□□□□ -0.58
SNRNP35-204ENST00000527158 TIMM21Q9BVV7 248 aa11.44□□□□□ -0.58
SNRNP35-204ENST00000527158 A8MZ25 164 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 M0QXV9 152 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 SMAGPQ0VAQ4 97 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 FOXI1Q12951 378 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 NTM-AS1Q6ZSK4 140 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 Q8NAQ8 132 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 FAM104AQ969W3 186 aa11.43□□□□□ -0.58
SNRNP35-204ENST00000527158 SBSPONQ8IVN8 264 aa11.42□□□□□ -0.58
SNRNP35-204ENST00000527158 DAD1P61803 113 aa11.41□□□□□ -0.58
SNRNP35-204ENST00000527158 MRPS36P82909 103 aaKnown RBP11.41□□□□□ -0.58
SNRNP35-204ENST00000527158 PRO0255Q9UI72 69 aa11.41□□□□□ -0.58
SNRNP35-204ENST00000527158 SPART-AS1P0CW21 52 aa11.41□□□□□ -0.58
SNRNP35-204ENST00000527158 PPDPFLQ8WWR9 84 aa11.41□□□□□ -0.58
SNRNP35-204ENST00000527158 TMEM243Q9BU79 118 aa11.41□□□□□ -0.58
SNRNP35-204ENST00000527158 A0A0J9YXV3 536 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms