RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 A8MZ25 164 aa9.45□□□□□ -0.9
USP53-209ENST00000514665 H3BT86 120 aa9.45□□□□□ -0.9
USP53-209ENST00000514665 TRAV26-1A0A087WT03 109 aa9.44□□□□□ -0.9
USP53-209ENST00000514665 CLPSL1A2RUU4 121 aa9.44□□□□□ -0.9
USP53-209ENST00000514665 FLNBO75369 2602 aaKnown RBP9.44□□□□□ -0.9
USP53-209ENST00000514665 PRORYQ9H606 182 aa9.44□□□□□ -0.9
USP53-209ENST00000514665 COL6A3P12111 3177 aa9.44□□□□□ -0.9
USP53-209ENST00000514665 Q6YL49 198 aa9.44□□□□□ -0.9
USP53-209ENST00000514665 ACYP1P07311 99 aa9.43□□□□□ -0.9
USP53-209ENST00000514665 IGHV4-31P0DP07 118 aa9.43□□□□□ -0.9
USP53-209ENST00000514665 ODF3Q96PU9 254 aa9.43□□□□□ -0.9
USP53-209ENST00000514665 SPAG11BQ08648 103 aa9.43□□□□□ -0.9
USP53-209ENST00000514665 PRO0255Q9UI72 69 aa9.43□□□□□ -0.9
USP53-209ENST00000514665 TRBV27A0A0K0K1C4 114 aa9.42□□□□□ -0.9
USP53-209ENST00000514665 SPANXB1Q9NS25 103 aaPredicted RBP9.42□□□□□ -0.9
USP53-209ENST00000514665 TET2Q6N021 2002 aaPredicted RBP9.42□□□□□ -0.9
USP53-209ENST00000514665 TEX49A0A1B0GTD5 131 aa9.42□□□□□ -0.9
USP53-209ENST00000514665 MRPS12O15235 138 aaKnown RBP9.42□□□□□ -0.9
USP53-209ENST00000514665 NCR3O14931 201 aa9.42□□□□□ -0.9
USP53-209ENST00000514665 EXPH5Q8NEV8 1989 aa9.42□□□□□ -0.9
USP53-209ENST00000514665 ANKRD17O75179 2603 aaKnown RBP9.42□□□□□ -0.9
USP53-209ENST00000514665 AGRNO00468 2067 aa9.42□□□□□ -0.9
USP53-209ENST00000514665 A0A1W2PPR1 153 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 TRACP01848 142 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 PSMB8P28062 276 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 hADV29S1A0JD25 119 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 TMEM223A0PJW6 202 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 A0A0B4J2C4 111 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 AVPP01185 164 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 MT-ATP8P03928 68 aa9.41□□□□□ -0.9
USP53-209ENST00000514665 CDK2AP2O75956 126 aa9.4□□□□□ -0.9
USP53-209ENST00000514665 EDN2P20800 178 aa9.4□□□□□ -0.9
USP53-209ENST00000514665 Q6ZSV7 163 aa9.4□□□□□ -0.9
USP53-209ENST00000514665 CFAP126Q5VTH2 177 aa9.4□□□□□ -0.9
USP53-209ENST00000514665 C18orf65Q6ZTR6 163 aa9.4□□□□□ -0.9
USP53-209ENST00000514665 TRANK1O15050 2925 aa9.4□□□□□ -0.9
USP53-209ENST00000514665 POLR2KP53803 58 aaKnown RBP9.4□□□□□ -0.91
USP53-209ENST00000514665 RBMY1FQ15415 496 aaKnown RBP9.4□□□□□ -0.91
USP53-209ENST00000514665 PIK3CD-AS1Q5SR53 167 aa9.4□□□□□ -0.91
USP53-209ENST00000514665 SMIM20Q8N5G0 67 aa9.4□□□□□ -0.91
USP53-209ENST00000514665 KLLNB2CW77 178 aa9.39□□□□□ -0.91
USP53-209ENST00000514665 RPL18AQ02543 176 aaKnown RBP9.39□□□□□ -0.91
USP53-209ENST00000514665 A0A1B0GX51 115 aa9.39□□□□□ -0.91
USP53-209ENST00000514665 IGHV4-28A0A0C4DH34 117 aa9.39□□□□□ -0.91
USP53-209ENST00000514665 CRYGDP07320 174 aa9.39□□□□□ -0.91
USP53-209ENST00000514665 CNFNQ9BYD5 112 aa9.39□□□□□ -0.91
USP53-209ENST00000514665 USP24Q9UPU5 2620 aa9.39□□□□□ -0.91
USP53-209ENST00000514665 F8W735 103 aaPredicted RBP9.39□□□□□ -0.91
USP53-209ENST00000514665 CENPEQ02224 2701 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 TRIAP1O43715 76 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 FAM222AQ5U5X8 452 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 C14orf132Q9NPU4 83 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 TRBV6-5A0A0K0K1A5 114 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 TSHBP01222 138 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 UBE2BP63146 152 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 LINC00269Q8N2A0 174 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 RMI2Q96E14 147 aa9.38□□□□□ -0.91
USP53-209ENST00000514665 FREM2Q5SZK8 3169 aa9.37□□□□□ -0.91
USP53-209ENST00000514665 DCANP1Q8TF63 244 aa9.37□□□□□ -0.91
USP53-209ENST00000514665 WFDC10AQ9H1F0 79 aa9.37□□□□□ -0.91
USP53-209ENST00000514665 ETDCA0A1B0GVM5 59 aa9.37□□□□□ -0.91
USP53-209ENST00000514665 NDUFA1O15239 70 aa9.37□□□□□ -0.91
USP53-209ENST00000514665 SPANXCQ9NY87 97 aa9.37□□□□□ -0.91
USP53-209ENST00000514665 LINC00308Q8TCZ7 52 aa9.36□□□□□ -0.91
USP53-209ENST00000514665 SPANXDQ9BXN6 97 aa9.36□□□□□ -0.91
USP53-209ENST00000514665 IGLV1-40P01703 118 aa9.36□□□□□ -0.91
USP53-209ENST00000514665 MUC4Q99102 2169 aa9.35□□□□□ -0.91
USP53-209ENST00000514665 LINC00482Q8N8I6 264 aa9.35□□□□□ -0.91
USP53-209ENST00000514665 ZNF702PQ9H963 129 aa9.35□□□□□ -0.91
USP53-209ENST00000514665 COL5A1P20908 1838 aaPredicted RBP9.35□□□□□ -0.91
USP53-209ENST00000514665 A0A096LNJ9 63 aa9.35□□□□□ -0.91
USP53-209ENST00000514665 INSL3P51460 131 aa9.35□□□□□ -0.91
USP53-209ENST00000514665 RNF183Q96D59 192 aa9.34□□□□□ -0.91
USP53-209ENST00000514665 ADAMTS20P59510 1910 aa9.34□□□□□ -0.91
USP53-209ENST00000514665 ZMAT4Q9H898 229 aa9.34□□□□□ -0.91
USP53-209ENST00000514665 RBM3P98179 157 aaKnown RBP9.34□□□□□ -0.91
USP53-209ENST00000514665 HIGD2BQ4VC39 106 aa9.34□□□□□ -0.91
USP53-209ENST00000514665 RAI1Q7Z5J4 1906 aaPredicted RBP9.34□□□□□ -0.91
USP53-209ENST00000514665 F8P00451 2351 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 DMDP11532 3685 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 LAMA1P25391 3075 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 SLPIP03973 132 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 JMJD7-PLA2G4BH0Y9G9 81 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 CXCL5P42830 114 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 CCL18P55774 89 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 C9orf85Q96MD7 179 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 PSMG3-AS1Q96PY0 264 aa9.33□□□□□ -0.92
USP53-209ENST00000514665 ATOX1O00244 68 aa9.32□□□□□ -0.92
USP53-209ENST00000514665 REG3AQ06141 175 aa9.32□□□□□ -0.92
USP53-209ENST00000514665 MRGPRG-AS1Q2M3A8 158 aa9.32□□□□□ -0.92
USP53-209ENST00000514665 PYGO1Q9Y3Y4 419 aa9.32□□□□□ -0.92
USP53-209ENST00000514665 LOC100131303A0A0U1RQF7 123 aa9.32□□□□□ -0.92
USP53-209ENST00000514665 FUSP35637 526 aaKnown RBP eCLIP9.32□□□□□ -0.92
USP53-209ENST00000514665 TRBV6-8A0A0A6YYG3 113 aa9.31□□□□□ -0.92
USP53-209ENST00000514665 IGIPA6NJ69 53 aa9.31□□□□□ -0.92
USP53-209ENST00000514665 LINC00643Q86TS7 51 aa9.31□□□□□ -0.92
USP53-209ENST00000514665 DIRC1Q969H9 104 aa9.31□□□□□ -0.92
USP53-209ENST00000514665 WDFY4Q6ZS81 3184 aa9.31□□□□□ -0.92
USP53-209ENST00000514665 TIRAPP58753 221 aa9.31□□□□□ -0.92
USP53-209ENST00000514665 CHCHD10Q8WYQ3 142 aaPredicted RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms