RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 IGHV3-33P01772 117 aa7.08□□□□□ -1.28
CLIP1-204ENST00000501271 C1QTNF4Q9BXJ3 329 aa7.08□□□□□ -1.28
CLIP1-204ENST00000501271 NOTCH3Q9UM47 2321 aa7.08□□□□□ -1.28
CLIP1-204ENST00000501271 NDUFA12Q9UI09 145 aa7.08□□□□□ -1.28
CLIP1-204ENST00000501271 GAGE12HA6NDE8 117 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 H7C2G1 150 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 KRTAP1-1Q07627 177 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 ADAMTSL4-AS1Q5T5F5 129 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 Q6ZTI0 123 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 TEX29Q8N6K0 151 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 TRBV20-1A0A075B6N2 111 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 SCGB1C2P0DMR2 95 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 FOXI1Q12951 378 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.07□□□□□ -1.28
CLIP1-204ENST00000501271 WFDC10AQ9H1F0 79 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 GTSF1LQ9H1H1 148 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 CDKN2A-AS1Q9UH64 79 aa7.07□□□□□ -1.28
CLIP1-204ENST00000501271 MTORP42345 2549 aa7.06□□□□□ -1.28
CLIP1-204ENST00000501271 LINC00694P0DN24 101 aa7.06□□□□□ -1.28
CLIP1-204ENST00000501271 ATP6V0E2Q8NHE4 81 aa7.06□□□□□ -1.28
CLIP1-204ENST00000501271 LINC01006Q8NI28 216 aa7.06□□□□□ -1.28
CLIP1-204ENST00000501271 SPATA25Q9BR10 227 aa7.06□□□□□ -1.28
CLIP1-204ENST00000501271 GEMIN7Q9H840 131 aaKnown RBP7.06□□□□□ -1.28
CLIP1-204ENST00000501271 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.06□□□□□ -1.28
CLIP1-204ENST00000501271 GIG44P09565 113 aaPredicted RBP7.06□□□□□ -1.28
CLIP1-204ENST00000501271 ERG28Q9UKR5 140 aa7.06□□□□□ -1.28
CLIP1-204ENST00000501271 K7EQD1 137 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 COX6A2Q02221 97 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 ZFAND6Q6FIF0 208 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 SBSPONQ8IVN8 264 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 SPANXDQ9BXN6 97 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 SPANXCQ9NY87 97 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 ITPR2Q14571 2701 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 IGLV5-45A0A087WSX0 123 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 PRSS2P07478 247 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 NPC2P61916 151 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 DGAT2L7PQ6IED9 249 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 NTM-AS1Q6ZSK4 140 aa7.05□□□□□ -1.28
CLIP1-204ENST00000501271 NDUFA7O95182 113 aa7.04□□□□□ -1.28
CLIP1-204ENST00000501271 TIRAPP58753 221 aa7.04□□□□□ -1.28
CLIP1-204ENST00000501271 MIAQ16674 131 aa7.04□□□□□ -1.28
CLIP1-204ENST00000501271 Q1RN00 199 aa7.04□□□□□ -1.28
CLIP1-204ENST00000501271 NOP10Q9NPE3 64 aaKnown RBP7.04□□□□□ -1.28
CLIP1-204ENST00000501271 TRAV4A0A0B4J268 109 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 RNASE1P07998 156 aaKnown RBP7.03□□□□□ -1.28
CLIP1-204ENST00000501271 RPL36AP83881 106 aaKnown RBP7.03□□□□□ -1.28
CLIP1-204ENST00000501271 TEN1Q86WV5 123 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 RPL36ALQ969Q0 106 aaKnown RBP7.03□□□□□ -1.28
CLIP1-204ENST00000501271 TMEM101Q96IK0 257 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 CARD19Q96LW7 228 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 SIGMAR1Q99720 223 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 YAE1D1Q9NRH1 226 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 TRBV10-1A0A0K0K1A3 114 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 PLAC8L1A1L4L8 177 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 GAGE12JA6NER3 117 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 SMAGPQ0VAQ4 97 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 GAGE4Q13068 117 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 GAGE5Q13069 117 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 LINC00242Q5T6M2 205 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 C2CD3Q4AC94 2353 aa7.03□□□□□ -1.28
CLIP1-204ENST00000501271 RPL35AP18077 110 aaKnown RBP7.02□□□□□ -1.28
CLIP1-204ENST00000501271 ANKRD29Q8N6D5 301 aa7.02□□□□□ -1.28
CLIP1-204ENST00000501271 DAND5Q8N907 189 aa7.02□□□□□ -1.28
CLIP1-204ENST00000501271 C16orf95Q9H693 158 aa7.02□□□□□ -1.28
CLIP1-204ENST00000501271 C19orf73Q9NVV2 129 aa7.02□□□□□ -1.28
CLIP1-204ENST00000501271 NDUFA1O15239 70 aa7.02□□□□□ -1.29
CLIP1-204ENST00000501271 TRIAP1O43715 76 aa7.02□□□□□ -1.29
CLIP1-204ENST00000501271 DAZ2Q13117 558 aaKnown RBP7.02□□□□□ -1.29
CLIP1-204ENST00000501271 DAZ4Q86SG3 579 aaKnown RBP7.02□□□□□ -1.29
CLIP1-204ENST00000501271 DAZ3Q9NR90 486 aaKnown RBP7.02□□□□□ -1.29
CLIP1-204ENST00000501271 C9JAW5 83 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 SLC25A20O43772 301 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 IGLV1-51P01701 117 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 HERVK_113P63121 156 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 PPDPFLQ8WWR9 84 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 IGLV5-39A0A0G2JS06 123 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 GAGE7O76087 117 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 GAGE12FP0CL80 117 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 GAGE12GP0CL81 117 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 GAGE12IP0CL82 117 aa7.01□□□□□ -1.29
CLIP1-204ENST00000501271 CSDC2Q9Y534 153 aaKnown RBP7.01□□□□□ -1.29
CLIP1-204ENST00000501271 TRAV13-1A0A0B4J241 112 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 TRBV30A0A0K0K1B3 111 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 LOC100131303A0A0U1RQF7 123 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 TIMM17BO60830 172 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 PLA2G2AP14555 144 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 FAM19A3Q7Z5A8 133 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 C16orf74Q96GX8 76 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 CDIP1Q9H305 208 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 SMIM1B2RUZ4 78 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 CSNK1G2-AS1Q8NCQ2 148 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 Q9H8V8 135 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 CDC42SE2Q9NRR3 84 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 ICOSQ9Y6W8 199 aa7□□□□□ -1.29
CLIP1-204ENST00000501271 TRGV2A0A075B6R0 118 aa6.99□□□□□ -1.29
CLIP1-204ENST00000501271 CMC4P56277 68 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-204ENST00000501271 ATXN8Q156A1 80 aa6.99□□□□□ -1.29
CLIP1-204ENST00000501271 LINC01620Q4KN68 170 aa6.99□□□□□ -1.29
CLIP1-204ENST00000501271 ZNF625Q96I27 306 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-204ENST00000501271 FAM110AQ9BQ89 295 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms