RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 TCTE3Q8IZS6 198 aa-0.53□□□□□ -2.49
SMC4-227ENST00000497984 DOPEY2Q9Y3R5 2298 aa-0.53□□□□□ -2.49
SMC4-227ENST00000497984 AHCTF1Q8WYP5 2266 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 G3V318 75 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 YPEL1O60688 119 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 S100A5P33763 92 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 MT1LQ93083 61 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 CYP4F30PQ9H0H9 118 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 NDUFA12Q9UI09 145 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 COL4A6Q14031 1691 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 ERCC6Q03468 1493 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 ARAP1Q96P48 1450 aa-0.54□□□□□ -2.5
SMC4-227ENST00000497984 M0R2T5 61 aa-0.55□□□□□ -2.5
SMC4-227ENST00000497984 NBEAP1P0C6P0 100 aa-0.55□□□□□ -2.5
SMC4-227ENST00000497984 UBE2DNLQ8IWF7 75 aa-0.55□□□□□ -2.5
SMC4-227ENST00000497984 BATF3Q9NR55 127 aa-0.55□□□□□ -2.5
SMC4-227ENST00000497984 HSPB11Q9Y547 144 aa-0.55□□□□□ -2.5
SMC4-227ENST00000497984 GOLGA3Q08378 1498 aa-0.55□□□□□ -2.5
SMC4-227ENST00000497984 LAMC1P11047 1609 aa-0.56□□□□□ -2.5
SMC4-227ENST00000497984 LINC01545Q5VT33 79 aa-0.56□□□□□ -2.5
SMC4-227ENST00000497984 MAGOHBQ96A72 148 aaKnown RBP-0.56□□□□□ -2.5
SMC4-227ENST00000497984 CASZ1Q86V15 1759 aa-0.56□□□□□ -2.5
SMC4-227ENST00000497984 TRBV20-1A0A075B6N2 111 aa-0.57□□□□□ -2.5
SMC4-227ENST00000497984 LCE6AA0A183 80 aa-0.57□□□□□ -2.5
SMC4-227ENST00000497984 EDDM3BP56851 147 aa-0.57□□□□□ -2.5
SMC4-227ENST00000497984 PRO0255Q9UI72 69 aa-0.57□□□□□ -2.5
SMC4-227ENST00000497984 KDM5AP29375 1690 aaKnown RBP-0.57□□□□□ -2.5
SMC4-227ENST00000497984 USF3Q68DE3 2245 aa-0.57□□□□□ -2.5
SMC4-227ENST00000497984 IBTKQ9P2D0 1353 aaPredicted RBP-0.57□□□□□ -2.5
SMC4-227ENST00000497984 ZNF142P52746 1687 aaPredicted RBP-0.58□□□□□ -2.5
SMC4-227ENST00000497984 CLPSL1A2RUU4 121 aa-0.58□□□□□ -2.5
SMC4-227ENST00000497984 PRM1P04553 51 aa-0.58□□□□□ -2.5
SMC4-227ENST00000497984 DEFB109BQ30KR1 87 aa-0.58□□□□□ -2.5
SMC4-227ENST00000497984 C10orf82Q8WW14 230 aa-0.58□□□□□ -2.5
SMC4-227ENST00000497984 SELENOSQ9BQE4 189 aa-0.58□□□□□ -2.5
SMC4-227ENST00000497984 TET3O43151 1660 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 GNG14A0A1W2PPG7 69 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 H0YJX3 145 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 M0R129 80 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 WFDC2Q14508 124 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 CCDC153Q494R4 210 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 MORN2Q502X0 79 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 MIC13Q5XKP0 118 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 WFDC6Q9BQY6 131 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 CNFNQ9BYD5 112 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 SCP2D1Q9UJQ7 156 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 F5P12259 2224 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 ZMYM4Q5VZL5 1548 aa-0.59□□□□□ -2.5
SMC4-227ENST00000497984 HELZP42694 1942 aaKnown RBP-0.6□□□□□ -2.5
SMC4-227ENST00000497984 TRAV1-2A0A0B4J238 106 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 TRBV10-3A0A0K0K1G6 114 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 FAM236AA0A1B0GUQ0 79 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 FAM236BA0A1B0GV22 79 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 M0R3E3 92 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 PIRTP0C851 137 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 UBE2D1P51668 147 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 KRTAP19-5Q3LI72 72 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 C9orf116Q5BN46 136 aaPredicted RBP-0.6□□□□□ -2.51
SMC4-227ENST00000497984 VSTM2AQ8TAG5 236 aa-0.6□□□□□ -2.51
SMC4-227ENST00000497984 PHLPP1O60346 1717 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 TIAM2Q8IVF5 1701 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 CDC42BPGQ6DT37 1551 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 A0A0D9SFI3 127 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 SPINK8P0C7L1 97 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 DEFB1P60022 68 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 NCS1P62166 190 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 SPANXN1Q5VSR9 72 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 Q5VV11 94 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 FMN2Q9NZ56 1722 aa-0.61□□□□□ -2.51
SMC4-227ENST00000497984 MYH1P12882 1939 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 NHSL1Q5SYE7 1610 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 BIVM-ERCC5R4GMW8 1640 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 K7EQZ3 153 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 PITX3O75364 302 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 TNFP01375 233 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 DBIP07108 87 aaKnown RBP-0.62□□□□□ -2.51
SMC4-227ENST00000497984 RPS29P62273 56 aaKnown RBP-0.62□□□□□ -2.51
SMC4-227ENST00000497984 SPAG11BQ08648 103 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 SPANXCQ9NY87 97 aa-0.62□□□□□ -2.51
SMC4-227ENST00000497984 PLXNA2O75051 1894 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 KNDC1Q76NI1 1749 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 LYNX1G3V0Z9 82 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 IGLC6P0CF74 106 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 UBE2G1P62253 170 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 SAR1AQ9NR31 198 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 RPRMQ9NS64 109 aa-0.63□□□□□ -2.51
SMC4-227ENST00000497984 SLIT1O75093 1534 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 SPAARA0A1B0GVQ0 90 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 DEFB4AO15263 64 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 PIN1P1O15428 100 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 NEFHP12036 1026 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 TAC4Q86UU9 113 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 Q8IZM0 81 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 MMGT1Q8N4V1 131 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 AIF1LQ9BQI0 150 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 MRPL40Q9NQ50 206 aaKnown RBP-0.64□□□□□ -2.51
SMC4-227ENST00000497984 SPANXA1Q9NS26 97 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 TSC2P49815 1807 aa-0.64□□□□□ -2.51
SMC4-227ENST00000497984 IQSEC2Q5JU85 1478 aa-0.65□□□□□ -2.51
SMC4-227ENST00000497984 ARHGEF10O15013 1369 aa-0.65□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms