RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 JMJD1CQ15652 2540 aa8.04□□□□□ -1.12
CHMP3-209ENST00000494623 ZNF418Q8TF45 676 aaPredicted RBP8.04□□□□□ -1.12
CHMP3-209ENST00000494623 IL17DQ8TAD2 202 aa8.04□□□□□ -1.12
CHMP3-209ENST00000494623 VSIG2Q96IQ7 327 aa8.04□□□□□ -1.12
CHMP3-209ENST00000494623 C16orf95Q9H693 158 aa8.04□□□□□ -1.12
CHMP3-209ENST00000494623 NDUFA12Q9UI09 145 aa8.04□□□□□ -1.12
CHMP3-209ENST00000494623 EIF4EBP3O60516 100 aaPredicted RBP8.03□□□□□ -1.12
CHMP3-209ENST00000494623 TMEM263Q8WUH6 116 aaKnown RBP8.03□□□□□ -1.12
CHMP3-209ENST00000494623 SETXQ7Z333 2677 aaKnown RBP8.03□□□□□ -1.12
CHMP3-209ENST00000494623 GAGE12JA6NER3 117 aa8.03□□□□□ -1.12
CHMP3-209ENST00000494623 TCL1BO95988 128 aa8.03□□□□□ -1.12
CHMP3-209ENST00000494623 GIG44P09565 113 aaPredicted RBP8.03□□□□□ -1.12
CHMP3-209ENST00000494623 RPL36AP83881 106 aaKnown RBP8.03□□□□□ -1.12
CHMP3-209ENST00000494623 GAGE4Q13068 117 aa8.03□□□□□ -1.12
CHMP3-209ENST00000494623 GAGE5Q13069 117 aa8.03□□□□□ -1.12
CHMP3-209ENST00000494623 RPL36ALQ969Q0 106 aaKnown RBP8.03□□□□□ -1.12
CHMP3-209ENST00000494623 CDKN2A-AS1Q9UH64 79 aa8.03□□□□□ -1.12
CHMP3-209ENST00000494623 ANK3Q12955 4377 aaKnown RBP8.02□□□□□ -1.12
CHMP3-209ENST00000494623 LINC00694P0DN24 101 aa8.02□□□□□ -1.12
CHMP3-209ENST00000494623 SMCPP49901 116 aaPredicted RBP8.02□□□□□ -1.12
CHMP3-209ENST00000494623 ADAMTSL4-AS1Q5T5F5 129 aa8.02□□□□□ -1.12
CHMP3-209ENST00000494623 K7EQD1 137 aa8.02□□□□□ -1.13
CHMP3-209ENST00000494623 INSL3P51460 131 aa8.02□□□□□ -1.13
CHMP3-209ENST00000494623 NPC2P61916 151 aa8.02□□□□□ -1.13
CHMP3-209ENST00000494623 LYRM7Q5U5X0 104 aa8.02□□□□□ -1.13
CHMP3-209ENST00000494623 ERG28Q9UKR5 140 aa8.02□□□□□ -1.13
CHMP3-209ENST00000494623 NDUFA7O95182 113 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 PLA2G2AP14555 144 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 CMC4P56277 68 aaPredicted RBP8.01□□□□□ -1.13
CHMP3-209ENST00000494623 COX6A2Q02221 97 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 TRAV4A0A0B4J268 109 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 J3QR89 54 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 GAGE7O76087 117 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 IGLV1-51P01701 117 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 IGHV3-33P01772 117 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 GAGE12FP0CL80 117 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 GAGE12GP0CL81 117 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 GAGE12IP0CL82 117 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 NTM-AS1Q6ZSK4 140 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.01□□□□□ -1.13
CHMP3-209ENST00000494623 LITAFQ99732 161 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 SMR3AQ99954 134 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 TRGV2A0A075B6R0 118 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 J3QKU1 62 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 C2CD3Q4AC94 2353 aa8.01□□□□□ -1.13
CHMP3-209ENST00000494623 TRAV16A0A0A6YYK6 109 aaPredicted RBP8□□□□□ -1.13
CHMP3-209ENST00000494623 TRBV10-1A0A0K0K1A3 114 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 Q1RN00 199 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 TRBV20-1A0A075B6N2 111 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 A0A0B4J2C4 111 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 TIRAPP58753 221 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 DAZ2Q13117 558 aaKnown RBP8□□□□□ -1.13
CHMP3-209ENST00000494623 DAZ4Q86SG3 579 aaKnown RBP8□□□□□ -1.13
CHMP3-209ENST00000494623 TMEM101Q96IK0 257 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 DAZ3Q9NR90 486 aaKnown RBP8□□□□□ -1.13
CHMP3-209ENST00000494623 C19orf73Q9NVV2 129 aa8□□□□□ -1.13
CHMP3-209ENST00000494623 TRAV13-1A0A0B4J241 112 aa7.99□□□□□ -1.13
CHMP3-209ENST00000494623 HELZ2Q9BYK8 2649 aaKnown RBP7.99□□□□□ -1.13
CHMP3-209ENST00000494623 PLAC8L1A1L4L8 177 aa7.99□□□□□ -1.13
CHMP3-209ENST00000494623 LINC00242Q5T6M2 205 aa7.99□□□□□ -1.13
CHMP3-209ENST00000494623 LOC100131303A0A0U1RQF7 123 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 HILS1P60008 231 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 SMAGPQ0VAQ4 97 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 ZFAND6Q6FIF0 208 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 C16orf74Q96GX8 76 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 GAGE12HA6NDE8 117 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 SCGB1A1P11684 91 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 CKS1BP61024 79 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 DAND5Q8N907 189 aa7.98□□□□□ -1.13
CHMP3-209ENST00000494623 HERV-K104P63124 156 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 GTSF1LQ9H1H1 148 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 IGLV5-45A0A087WSX0 123 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 HERVK_113P63121 156 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 FOXI1Q12951 378 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 MIAQ16674 131 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 CSNK1G2-AS1Q8NCQ2 148 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 ZNF625Q96I27 306 aaPredicted RBP7.97□□□□□ -1.13
CHMP3-209ENST00000494623 C1QTNF4Q9BXJ3 329 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 SPANXDQ9BXN6 97 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 SPANXCQ9NY87 97 aa7.97□□□□□ -1.13
CHMP3-209ENST00000494623 TRGV4A0A0C4DH28 118 aa7.96□□□□□ -1.13
CHMP3-209ENST00000494623 A0A0U1RRA0 63 aa7.96□□□□□ -1.13
CHMP3-209ENST00000494623 UBE2L6O14933 153 aa7.96□□□□□ -1.13
CHMP3-209ENST00000494623 CDC42SE2Q9NRR3 84 aa7.96□□□□□ -1.14
CHMP3-209ENST00000494623 UNC79Q9P2D8 2635 aa7.96□□□□□ -1.14
CHMP3-209ENST00000494623 KRTAP10-3P60369 221 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 SBSPONQ8IVN8 264 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 SIGMAR1Q99720 223 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 FAM110AQ9BQ89 295 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 CSDC2Q9Y534 153 aaKnown RBP7.95□□□□□ -1.14
CHMP3-209ENST00000494623 HIVEP2P31629 2446 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 FASNP49327 2511 aaKnown RBP7.95□□□□□ -1.14
CHMP3-209ENST00000494623 C9JAW5 83 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 NDUFA1O15239 70 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 TMEM243Q9BU79 118 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 Q9H8V8 135 aa7.95□□□□□ -1.14
CHMP3-209ENST00000494623 OVOL2Q9BRP0 275 aa7.94□□□□□ -1.14
CHMP3-209ENST00000494623 PF4P02776 101 aa7.94□□□□□ -1.14
CHMP3-209ENST00000494623 CIRBPQ14011 172 aaKnown RBP7.94□□□□□ -1.14
CHMP3-209ENST00000494623 ATP6V0E2Q8NHE4 81 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms