RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 WFDC10AQ9H1F0 79 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 LST1O00453 97 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 ODF3Q96PU9 254 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 HIVEP2P31629 2446 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 WFDC13Q8IUB5 93 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 CHCHD10Q8WYQ3 142 aaPredicted RBP6.61□□□□□ -1.35
SYNE1-224ENST00000478916 CCDC140Q96MF4 163 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 IGLV2-8P01709 118 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 C6orf99Q4VX62 202 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 TP73-AS1Q9UF72 201 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 IGLV2-14P01704 120 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 TTC28Q96AY4 2481 aa6.61□□□□□ -1.35
SYNE1-224ENST00000478916 PLXNB1O43157 2135 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 MED12LQ86YW9 2145 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 LY6G6DO95868 133 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 ZNF80P51504 273 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-224ENST00000478916 DEFB1P60022 68 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 EBI3Q14213 229 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 LINC00322Q6ZN03 302 aaPredicted RBP6.6□□□□□ -1.35
SYNE1-224ENST00000478916 C11orf1Q9H5F2 150 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 E7EUB6 86 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 TRBV6-5A0A0K0K1A5 114 aa6.6□□□□□ -1.35
SYNE1-224ENST00000478916 NCOA6Q14686 2063 aaPredicted RBP6.59□□□□□ -1.35
SYNE1-224ENST00000478916 A0A087WZ39 114 aa6.59□□□□□ -1.35
SYNE1-224ENST00000478916 U3KQK5 164 aa6.59□□□□□ -1.35
SYNE1-224ENST00000478916 BDP1A6H8Y1 2624 aa6.59□□□□□ -1.35
SYNE1-224ENST00000478916 SOSTDC1Q6X4U4 206 aa6.59□□□□□ -1.35
SYNE1-224ENST00000478916 DHRS4-AS1Q9P1J3 65 aa6.59□□□□□ -1.35
SYNE1-224ENST00000478916 C11orf71Q6IPW1 123 aa6.59□□□□□ -1.36
SYNE1-224ENST00000478916 TP53TG3Q9ULZ0 132 aa6.59□□□□□ -1.36
SYNE1-224ENST00000478916 FREM1Q5H8C1 2179 aa6.58□□□□□ -1.36
SYNE1-224ENST00000478916 DEFB114Q30KQ6 69 aa6.58□□□□□ -1.36
SYNE1-224ENST00000478916 C2orf91Q6ZV80 131 aa6.58□□□□□ -1.36
SYNE1-224ENST00000478916 Q6ZSV7 163 aa6.58□□□□□ -1.36
SYNE1-224ENST00000478916 FAM19A5Q7Z5A7 132 aaPredicted RBP6.58□□□□□ -1.36
SYNE1-224ENST00000478916 PLA2G2AP14555 144 aa6.58□□□□□ -1.36
SYNE1-224ENST00000478916 DEFB131BA0A096LNP1 70 aa6.58□□□□□ -1.36
SYNE1-224ENST00000478916 LRCOL1A6NCL2 159 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 LINC00526Q96FQ7 95 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 ARHGAP32A7KAX9 2087 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 IGHV4-30-4P0DP06 118 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 C22orf34Q6ZV56 151 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 DCANP1Q8TF63 244 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 EML5Q05BV3 1969 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 HCFC1P51610 2035 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 SMIM11BQ8TCY0 68 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 CRYGDP07320 174 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 KIAA1549LQ6ZVL6 1849 aa6.57□□□□□ -1.36
SYNE1-224ENST00000478916 Q6ZQY7 126 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 PRYO14603 147 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 LINC01548A6NM66 108 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 UBE2D2P62837 147 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 K7EQG2 157 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 Q6ZTI0 123 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 MBD6Q96DN6 1003 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 PYGO1Q9Y3Y4 419 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 ZNF706Q9Y5V0 76 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-224ENST00000478916 COL4A3Q01955 1670 aa6.56□□□□□ -1.36
SYNE1-224ENST00000478916 ACACBO00763 2458 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 XAGE1AQ9HD64 81 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 MED13LQ71F56 2210 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 M0R378 163 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 RNF185Q96GF1 192 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 SPINK6Q6UWN8 80 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 ZNF106Q9H2Y7 1883 aaKnown RBP6.55□□□□□ -1.36
SYNE1-224ENST00000478916 CUL9Q8IWT3 2517 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 PSMG3-AS1Q96PY0 264 aa6.55□□□□□ -1.36
SYNE1-224ENST00000478916 TRBV6-8A0A0A6YYG3 113 aa6.54□□□□□ -1.36
SYNE1-224ENST00000478916 YPEL4Q96NS1 127 aa6.54□□□□□ -1.36
SYNE1-224ENST00000478916 M0QY20 66 aa6.54□□□□□ -1.36
SYNE1-224ENST00000478916 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.54□□□□□ -1.36
SYNE1-224ENST00000478916 VPREB1P12018 145 aa6.54□□□□□ -1.36
SYNE1-224ENST00000478916 TRAV10A0A0B4J240 114 aa6.54□□□□□ -1.36
SYNE1-224ENST00000478916 Q8N976 141 aa6.54□□□□□ -1.36
SYNE1-224ENST00000478916 CSDC2Q9Y534 153 aaKnown RBP6.54□□□□□ -1.36
SYNE1-224ENST00000478916 ANKHD1Q8IWZ3 2542 aaKnown RBP6.54□□□□□ -1.36
SYNE1-224ENST00000478916 LY6LH3BQJ8 138 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 COX17Q14061 63 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 P0C879 139 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 Q6ZVQ6 151 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 PSPHP1O15172 72 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 NRACQ8N912 160 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 CELA1Q9UNI1 258 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 TRBV7-6A0A0J9YX20 115 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 SYCNQ0VAF6 134 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 ZNF702PQ9H963 129 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 IGKV2-28A0A075B6P5 120 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 IGKV2D-28P01615 120 aa6.53□□□□□ -1.36
SYNE1-224ENST00000478916 OTOGLQ3ZCN5 2332 aa6.52□□□□□ -1.37
SYNE1-224ENST00000478916 LINC00208Q96KT6 92 aa6.52□□□□□ -1.37
SYNE1-224ENST00000478916 TRBV7-7A0A0K0K1E9 115 aa6.52□□□□□ -1.37
SYNE1-224ENST00000478916 CRIP1P50238 77 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 LINC00482Q8N8I6 264 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 LINC01006Q8NI28 216 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 C7orf33Q8WU49 177 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 POM121L12Q8N7R1 296 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 NOTCH2Q04721 2471 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 TRBV6-4A0A1B0GX49 114 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 NANOS2P60321 138 aaKnown RBP6.51□□□□□ -1.37
SYNE1-224ENST00000478916 A8MZ25 164 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms