RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KRTAP10-4P60372 401 aaPredicted RBP9.15□□□□□ -0.94
UPF3A-204ENST00000475218 COX19Q49B96 90 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 WDR73Q6P4I2 378 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 RASL11AQ6T310 242 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 LINC01551Q86U37 167 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 GFRA4Q9GZZ7 299 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 DPH3P1Q9H4G8 78 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 RPP21Q9H633 154 aaKnown RBP9.15□□□□□ -0.94
UPF3A-204ENST00000475218 IGLV4-60A0A075B6I1 120 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 CRPP02741 224 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 MIAQ16674 131 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 LINC00528Q8N1L1 170 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 ZNF664Q8N3J9 261 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 H7C1H1 209 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 PRSS1P07477 247 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 FOXA3P55318 350 aaPredicted RBP9.14□□□□□ -0.95
UPF3A-204ENST00000475218 CHAC1Q9BUX1 264 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 PRO1933Q9H354 126 aa9.14□□□□□ -0.95
UPF3A-204ENST00000475218 HLA-DQA1P01909 254 aa9.13□□□□□ -0.95
UPF3A-204ENST00000475218 ESDP10768 282 aa9.13□□□□□ -0.95
UPF3A-204ENST00000475218 GATD1Q8NB37 220 aa9.13□□□□□ -0.95
UPF3A-204ENST00000475218 CIRBP-AS1Q8TBR5 109 aa9.13□□□□□ -0.95
UPF3A-204ENST00000475218 PGLYRP4Q96LB8 373 aa9.13□□□□□ -0.95
UPF3A-204ENST00000475218 TRAPPC1Q9Y5R8 145 aa9.13□□□□□ -0.95
UPF3A-204ENST00000475218 TRAV26-2A0A0B4J265 109 aa9.12□□□□□ -0.95
UPF3A-204ENST00000475218 CFAP161Q6P656 301 aa9.12□□□□□ -0.95
UPF3A-204ENST00000475218 A0A1B0GV90 55 aa9.12□□□□□ -0.95
UPF3A-204ENST00000475218 TWIST1Q15672 202 aa9.12□□□□□ -0.95
UPF3A-204ENST00000475218 TMEM243Q9BU79 118 aa9.12□□□□□ -0.95
UPF3A-204ENST00000475218 IGLV10-54A0A075B6I4 117 aa9.11□□□□□ -0.95
UPF3A-204ENST00000475218 M0R143 59 aa9.11□□□□□ -0.95
UPF3A-204ENST00000475218 RAB4AP20338 218 aa9.11□□□□□ -0.95
UPF3A-204ENST00000475218 REG3AQ06141 175 aa9.11□□□□□ -0.95
UPF3A-204ENST00000475218 C14orf177Q52M58 125 aa9.11□□□□□ -0.95
UPF3A-204ENST00000475218 PKHD1L1Q86WI1 4243 aa9.11□□□□□ -0.95
UPF3A-204ENST00000475218 LRP1Q07954 4544 aaKnown RBP9.1□□□□□ -0.95
UPF3A-204ENST00000475218 A0A1B0GUV1 79 aa9.1□□□□□ -0.95
UPF3A-204ENST00000475218 RPL39LQ96EH5 51 aaKnown RBP9.1□□□□□ -0.95
UPF3A-204ENST00000475218 PANO1I0J062 215 aa9.09□□□□□ -0.95
UPF3A-204ENST00000475218 MT-ND6P03923 174 aa9.09□□□□□ -0.95
UPF3A-204ENST00000475218 FAM231DQ6ZW35 169 aa9.09□□□□□ -0.95
UPF3A-204ENST00000475218 GAS8-AS1O95177 125 aa9.09□□□□□ -0.95
UPF3A-204ENST00000475218 TCAPO15273 167 aa9.08□□□□□ -0.96
UPF3A-204ENST00000475218 SCGB1D1O95968 90 aa9.08□□□□□ -0.96
UPF3A-204ENST00000475218 PLA2G1BP04054 148 aaKnown RBP9.08□□□□□ -0.96
UPF3A-204ENST00000475218 C9orf163Q8N9P6 203 aa9.08□□□□□ -0.96
UPF3A-204ENST00000475218 SLPIP03973 132 aa9.07□□□□□ -0.96
UPF3A-204ENST00000475218 DGAT2L7PQ6IED9 249 aa9.07□□□□□ -0.96
UPF3A-204ENST00000475218 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.07□□□□□ -0.96
UPF3A-204ENST00000475218 FAT3Q8TDW7 4589 aa9.07□□□□□ -0.96
UPF3A-204ENST00000475218 AMTP48728 403 aa9.07□□□□□ -0.96
UPF3A-204ENST00000475218 COTL1Q14019 142 aa9.07□□□□□ -0.96
UPF3A-204ENST00000475218 GNB1LQ9BYB4 327 aa9.07□□□□□ -0.96
UPF3A-204ENST00000475218 TEX43Q6ZNM6 134 aa9.06□□□□□ -0.96
UPF3A-204ENST00000475218 SDIM1Q6ZPB5 146 aa9.06□□□□□ -0.96
UPF3A-204ENST00000475218 TRAV8-4A0A0B4J246 113 aa9.05□□□□□ -0.96
UPF3A-204ENST00000475218 A8MWL6 223 aa9.05□□□□□ -0.96
UPF3A-204ENST00000475218 CT83Q5H943 113 aa9.05□□□□□ -0.96
UPF3A-204ENST00000475218 FAM231BA6NCW3 169 aa9.04□□□□□ -0.96
UPF3A-204ENST00000475218 CNBPP62633 177 aaKnown RBP9.04□□□□□ -0.96
UPF3A-204ENST00000475218 MIEN1Q9BRT3 115 aa9.04□□□□□ -0.96
UPF3A-204ENST00000475218 OSTCQ9NRP0 149 aa9.04□□□□□ -0.96
UPF3A-204ENST00000475218 RNF185Q96GF1 192 aa9.04□□□□□ -0.96
UPF3A-204ENST00000475218 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-204ENST00000475218 TRBV6-5A0A0K0K1A5 114 aa9.03□□□□□ -0.96
UPF3A-204ENST00000475218 IGKV2-29A2NJV5 120 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-204ENST00000475218 SDHAF1A6NFY7 115 aa9.03□□□□□ -0.96
UPF3A-204ENST00000475218 KRTAP29-1A8MX34 341 aaPredicted RBP9.03□□□□□ -0.96
UPF3A-204ENST00000475218 C15orf56Q8N910 161 aa9.03□□□□□ -0.96
UPF3A-204ENST00000475218 SNHG12Q9BXW3 62 aa9.03□□□□□ -0.96
UPF3A-204ENST00000475218 MRPL18Q9H0U6 180 aaKnown RBP9.03□□□□□ -0.96
UPF3A-204ENST00000475218 HIGD1CA8MV81 97 aa9.02□□□□□ -0.97
UPF3A-204ENST00000475218 UBE2L6O14933 153 aa9.02□□□□□ -0.97
UPF3A-204ENST00000475218 TSKUQ8WUA8 353 aa9.02□□□□□ -0.97
UPF3A-204ENST00000475218 hDV102S1A0JD36 115 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 NCR2O95944 276 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 HNRNPA3P51991 378 aaKnown RBP9.01□□□□□ -0.97
UPF3A-204ENST00000475218 CIRBPQ14011 172 aaKnown RBP9.01□□□□□ -0.97
UPF3A-204ENST00000475218 BAGE3Q86Y29 109 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 VAMP8Q9BV40 100 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 V9GYV3 84 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 GAGE12HA6NDE8 117 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 TSHBP01222 138 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 SMIM15Q7Z3B0 74 aa9.01□□□□□ -0.97
UPF3A-204ENST00000475218 A0A1B0GUT8 65 aa9□□□□□ -0.97
UPF3A-204ENST00000475218 FGF6P10767 208 aa9□□□□□ -0.97
UPF3A-204ENST00000475218 TMEM191AQ9H0A3 160 aa9□□□□□ -0.97
UPF3A-204ENST00000475218 IGKV3OR2-268A0A0C4DH90 116 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 APCSP02743 223 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 LINC00614P0C842 121 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 AMN1Q8IY45 258 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 H7C423 109 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 I3L3M4 83 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 SERF1AO75920 110 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 CHTF8P0CG12 524 aa8.99□□□□□ -0.97
UPF3A-204ENST00000475218 POLR2KP53803 58 aaKnown RBP8.99□□□□□ -0.97
UPF3A-204ENST00000475218 C20orf202A1L168 122 aa8.98□□□□□ -0.97
UPF3A-204ENST00000475218 J3QL48 77 aa8.98□□□□□ -0.97
UPF3A-204ENST00000475218 NUP35Q8NFH5 326 aa8.98□□□□□ -0.97
UPF3A-204ENST00000475218 CHCHD10Q8WYQ3 142 aaPredicted RBP8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms